Detail information of GWHGAAEX014070/evm.TU.scaffold_56.35


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|512550830|ref|YP_008088736.1|5.00E-109isocitrate dehydrogenase, NAD-dependent,mitochondrial type [Chthonomonas calidirosea T49]
KOGKOG07840Isocitrate dehydrogenase, gamma subunit
nrgi|672168429|ref|XP_008804216.1|0PREDICTED: isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial-like isoform X1 [Phoenix dactylifera]
Swissprottr|Q8LFC0|IDH1_ARATH0Isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial (Precursor)
trEMBLtr|M0TAV3|M0TAV3_MUSAM0Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr6P28080_001}
TAIRAT4G352600isocitrate dehydrogenase 1

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000006620715412097454-
Transcript Sequence

Network for GWHGAAEX014070

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module4

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00180.19Iso_dh513743.60E-80
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K00030IDH3 Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Microbial metabolism in diverse environmentsmap01120
Biosynthesis of antibioticsmap01130
Carbon metabolismmap01200
2-Oxocarboxylic acid metabolismmap01210
Biosynthesis of amino acidsmap01230
Citrate cycle (TCA cycle)map00020

Gene Ontology

GO term OntologyName
GO:0006099Biological Processtricarboxylic acid cycle
GO:0055114Biological Processoxidation-reduction process
GO:0004449Molecular Functionisocitrate dehydrogenase (NAD+) activity
GO:0016616Molecular Functionoxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms15.610
SRR2545915Juvenile tuber14.980
SRP108465SRR5643513five period of Gastrodia elata32.160
SRR5643514five period of Gastrodia elata47.150
SRR5643515five period of Gastrodia elata35.510
SRR5643524five period of Gastrodia elata48.320
SRR5643525five period of Gastrodia elata38.070
SRR5643528five period of Gastrodia elata52.780
SRR5643658five period of Gastrodia elata32.370
SRR5643659five period of Gastrodia elata22.040
SRR5643660five period of Gastrodia elata21.480
SRR5643661five period of Gastrodia elata23.640
SRR5643662five period of Gastrodia elata21.420
SRR5643663five period of Gastrodia elata20.560
SRR5643664five period of Gastrodia elata18.520
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_138.870
SRR6049655Rhizomagastrodiae_C368-T10_good_156.730
SRR6049656Rhizomagastrodiae_C368-T07_good_143.470
SRR6049657Rhizomagastrodiae_C368-T07_good_129.720
SRR6049658Rhizomagastrodiae_C368-T04_good_137.890
SRR6049659Rhizomagastrodiae_C368-T04_good_137.890
SRR6049660Rhizomagastrodiae_C368-T01_good_134.820
SRR6049661Rhizomagastrodiae_C368-T04_good_136.640
SRR6049662Rhizomagastrodiae_C368-T01_good_152.900
SRR6049663Rhizomagastrodiae_C368-T01_good_150.080
SRR6049664Rhizomagastrodiae_C368-T10_good_164.530
SRR6049665Rhizomagastrodiae_C368-T10_good_164.530
SRP279888GastroGastrodia elata tuber 20.31
JuvenJuvenile tuber29.94
Mother_GastroMother tuber of Gastrodia elata 69.71
Mother_JuvenMother tuber of Juvenile 34.31