Detail information of GWHGAAEX014073/evm.TU.scaffold_56.42


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|15669421|ref|NP_248231.1|2.00E-59putative mRNA 3'-end processing factor 2 [Methanocaldococcus jannaschii DSM 2661]
KOGKOG11360Predicted cleavage and polyadenylation specificity factor (CPSF subunit)
nrgi|695009560|ref|XP_009391419.1|0PREDICTED: cleavage and polyadenylation specificity factor subunit 3-II [Musa acuminata subsp. malaccensis]
Swissprottr|Q8GUU3|CPS3B_ARATH0Cleavage and polyadenylation specificity factor subunit 3-II
trEMBLtr|A0A059BF62|A0A059BF62_EUCGR0Uncharacterized protein {ECO:0000313|EMBL:KCW64496.1}
TAIRAT2G01730_10Unannotated protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000006622236162361398-
Transcript Sequence

Network for GWHGAAEX014073

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF16661.4Lactamase_B_6211923.90E-20
PF10996.7Beta-Casp2443623.20E-24
PF07521.11RMMBL3784367.90E-16
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms15.850
SRR2545915Juvenile tuber24.920
SRP108465SRR5643513five period of Gastrodia elata19.600
SRR5643514five period of Gastrodia elata18.510
SRR5643515five period of Gastrodia elata16.590
SRR5643524five period of Gastrodia elata17.240
SRR5643525five period of Gastrodia elata9.980
SRR5643528five period of Gastrodia elata8.720
SRR5643658five period of Gastrodia elata11.630
SRR5643659five period of Gastrodia elata18.770
SRR5643660five period of Gastrodia elata17.220
SRR5643661five period of Gastrodia elata22.900
SRR5643662five period of Gastrodia elata18.650
SRR5643663five period of Gastrodia elata17.470
SRR5643664five period of Gastrodia elata19.810
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_119.260
SRR6049655Rhizomagastrodiae_C368-T10_good_124.930
SRR6049656Rhizomagastrodiae_C368-T07_good_116.750
SRR6049657Rhizomagastrodiae_C368-T07_good_117.190
SRR6049658Rhizomagastrodiae_C368-T04_good_17.070
SRR6049659Rhizomagastrodiae_C368-T04_good_15.810
SRR6049660Rhizomagastrodiae_C368-T01_good_111.110
SRR6049661Rhizomagastrodiae_C368-T04_good_17.640
SRR6049662Rhizomagastrodiae_C368-T01_good_112.390
SRR6049663Rhizomagastrodiae_C368-T01_good_17.510
SRR6049664Rhizomagastrodiae_C368-T10_good_118.700
SRR6049665Rhizomagastrodiae_C368-T10_good_118.700
SRP279888GastroGastrodia elata tuber 17.90
JuvenJuvenile tuber22.92
Mother_GastroMother tuber of Gastrodia elata 12.76
Mother_JuvenMother tuber of Juvenile 17.30