Gene detail

Detail information of GWHGAAEX014078/evm.TU.scaffold_56.50

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|46446377\|ref\|YP_007742.1\|	4.00E-15	hypothetical protein pc0743 [Candidatus Protochlamydia amoebophila UWE25]
KOG	KOG1947	0	Leucine rich repeat proteins, some proteins contain F-box
nr	gi\|672110809\|ref\|XP_008797428.1\|	0	PREDICTED: F-box/LRR-repeat protein 15 [Phoenix dactylifera]
Swissprot	tr\|Q9SMY8\|FBL15_ARATH	0	F-box/LRR-repeat protein 15
trEMBL	tr\|I1QU79\|I1QU79_ORYGL	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:ORGLA10G0076200.1}
TAIR	AT4G33210	0	F-box family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000066	2541900	2577327	-

Transcript Sequence
>GWHTAAEX014078 ATATTGCGATTCTTGTCTCCACCACTTGACGCGCGGCTGTCTTCCGACGAAATAGAGAAGAGGATCTTTGGAAGATACATCGTCGTCTTCCTCCTCTCTGCGTGCCTTCTTTTTTTCGATTGTTATTTTGACGGTTCGGCTTCTCTGAAGAAGGTCACATGATTTCGTCATTTACCTCAGAATCCAACTATGTGTTGGCTTTGGTTCTAGGGTTCAGAATAGGATCAACATTGAACACTGACTGGAGCGCTCTCATCGGTCTTTGATCTGCCGTGTCTAGTGGCAAGAAGGGAATATTCGAGGATTAGTAATATGGTAGTGTTTTTGAGCGGAGAGCGTTTGTCAAGGTTTTTGTGAGGTTTAACGGGATGGCTGGGCGGGGGTTGAAGGCAGCGGCGGCAGATGAGGATGGTGACATGGATTCGGGTATTGAATGCGTTAGGGAGCCGGAAGATCTGGAGTTGCAGCTGTCCCTTGGGCACTGGGGATGGAGAGGTGAATCATCGTCCCAGAGGAGCAGCAGCAGCTGGCTTTTGCACGGTGATCTGACTGTTGGGAGCTCGAGCTATTCTGAAGGCATGAAATTTGGAAACAGATGGGGGCAGAATGTTGGGGAGGAGTTCATTGGGACAATGGAGGGCGTGAACCTTGATGACTTGGGCTTTCACGCTATGAAGAGAACCAATTTTGATGAAATGAGCAGGGAGACAGAGCACAAGCGACATAAGCTTCTTAAACTCGAGCATGCACATCGTACGGATGCATGTTCTTTACCTTGTGAAACATTTGTTCTGTCTGCAATTGAGAACAATGTTGATTCTCATTCTTTAGATACATTTGAAAGTCAGATGATCGATTACTTTAAGTCCAATGCAAATGCTATTGCTATCAAAAGCTCTATATATTCTAATGGTCGTCAGAATGATGGAGGTGAAATTGATAATTGCAATGTTCATACCTCAGATAATCGAATGGACCTCACTGAGGATCTTTTGCACCTGGTTTTTTCATTTTTAAGCCAGAGAGATTTATGTAAAGCAGGTGCAGCTTGCAAGCAGTGGCAGGTTGCGAGTATGCATGAGGATTTTTGGAGGTGTCTAAATTTGAAAGATGCAGAAGTCTCTCAGGCTAATTTTGAAGCTCTGTGTCACCGTTTTCCAAATGCAACTGAGGTTAACTTATTTGGAGTGCTTAACGCTGACATACTTGCTTTAGAGGCAATGACATCTCTCAGGTGTCTTGAAACATTATATTTGGGGAAAGGGCAGCTTGGCGATGGCTTCTTCCAAGCCTTGATTGATTGCCCGTCATTGAACAGTTTAAGCATTTATGATACTTCTTTTGGTAGTGGCATTCAGGAGGTATCCGTACATCATGATAGGCTTCATGAACTTAACATCATCAAGTGTCGTGTACATCGCGTCACAATTAGATGCCCTCAGCTGCAAACTTTGGCACTAAGGCGCACCAGCATGGCTCATGCTTTGCTTAGTTGCCCTCATTTACATGAATTGGATCTATCTTCCTGCCACAAACTATCTGATACTGGAATTCGCTCAGCAGCTACATCATGTCCTTTGTTGGCATCTTTGGACTTAGCCTTTTGCTCATGTATTAGTGATGAGACACTGCGCGAAATTGCATTTTCTTGCCCTAATATTTGTGTTCTGGATGCTTCTTATTGCCCAAATATCTCGCTCGAGTCCGTGAGGCTTCCTATGTTGATAGATCTGAAATTACATAATTGTGAGGGCATAACTTCGGCGTCAATGTCTGCAATATCTTATAGTCGAATGCTCGAGGCATTACAGCTTGATAACTGCAGTTTGCTAACTTCAGTCTCACTAGATCTGCCACATCTGCGGAGTATCAGTCTTGTTCATTGCCGCAAGTTTCTTGATTTAAATTTGCGGAGTCCGGTGCTTTCATATGTGAAGGTTTCAAACTGCTCGCTTCTTCATTGTATTAGCATTGTGTCAGATGCACTTAAGAAATTAGTGCTTCAAAAGCAGGAAAGTCTATCCAATTTATTGTTGCAGTGTAATAACTTGCAAGAAATTGACCTCAGCGATTGCGAATCTTTGTCAAATTCTGTTTGTGAAATTTTTAGTGAGGGAGGTGGTTGTCCTGTGCTTAAATCATTGGTTCTTGACAATTGTGAGAGCTTAACCACAGTGAAACTCCATTGTTACTCTCTTGTTAGTCTTTCCCTTGTTGGTTGCCGTGCTATAAATGCGCTCAACCTTTCTTGTCCAAAGCTTTTGAATATTAATCTTGATGGCTGCGATCATCTTAAGAAAGCATCCTTCTGTCCAGTTGGTCTAGAATATTTAAATTTGGGGATATGTCCAAAACTAAGTGTTCTACAGATTGAAGCACCAAAAATGTCATTATTGGAATTGAAGGGGTGTGGCATGCTATCTCAGGCGTCTATATGCTGTCCAAGTCTTACATCATTGGATGCTTCTTTCTGTAGGAAATTTACGGATGACTCATTATCCAGTACAACAGTTTCATGCACTCAGATTGAATCTCTGAACCTATCATCTTGCTTGGCCGTAGCATTTGATGGACTTTCTTCATTGCATTGGCTTCATTGTCTTACCCAGCTTGATTTGTCGTACACATTTTTGATGAATTTGCAGCCTGTATTTGATAGTTGTCATCAGCTAGTGATATTGAAACTTTCGGCTTGCAAGTACCTCAGAGATCCGTCCCTCGACGCTCTTTATAACAAAGGAGCACTTCCTGCCCTCCGCGAGCTGGACTTATCTTATTCATCGATTGGCCAGGCTGCCATAGTTGATCTTCTTTCTTGCTGTGCAAATTTAGTCAATGTGAATTTAAATGGATGTGTATATATGCATGAACTTTCATGGGACTCTAGCAGTTTCCAGCCCGTGGGCATGCCGATCAACCCTCTATCCAATTTGCTTCCTTCAGGAAATTCTGGTGGACAGTGCAGTGAGTTGAACCATCTTTTAGAGGTTCTCAATTGTATCGGGTGCCCATATCTCAAGAGAGTCGTAATACCGTTGACCACATGCTGCTTCCATTTGGCGAAGCTAAATCTTAACCTATCCACAAATCTAAAAGAAGTTGATTTATCTTGCCCCAACCTCAATAGTCTCAACTTGAGCAACTGCAGTTCGCTAGAGATTCTGAAGCTCGATTGTCCGCGGCTGATCAATATTCAACTTACGGCATGCAGCATGCTATCAGATGCGGCTGTCCAAGCTGCCATATCAGGCTGCTGTAATCTGGAAACCCTCACTCTTCACTCTTTCACAAAGGTCAGATTGCTCCAGAGAACACCTGCAACTTGATCCATTACACGATATATATAGATATATATAGCTAATATGTATATGTATGTTGGGGGACTTCAGGTAGATGCAGTTTGTACATATAGATTTCTGATGTAGAACTTGGGGGCCTATTAGGCTGATGTATAAATAGAGCTATTTTGACGCTGATGTTGTATTTGTCTGGGTTTTTTAGTGTTATAAGCTATGTGCGCTAATTTATCGATCTCAAGTGCCTTTTTTATTTATTTATTTGATTATGTTGCTTAAGTAATTTATGAAGCAAGAACTGGTCGCTAATATAATTTTTTTCATAATTTGTTCTTTAATTATTT

Network for GWHGAAEX014078

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12937.6	F-box-like	207	246	1.40E-05

Protein Sequence

>GWHPAAEX014078
MAGRGLKAAAADEDGDMDSGIECVREPEDLELQLSLGHWGWRGESSSQRSSSSWLLHGDLTVGSSSYSEGMKFGNRWGQNVGEEFIGTMEGVNLDDLGFHAMKRTNFDEMSRETEHKRHKLLKLEHAHRTDACSLPCETFVLSAIENNVDSHSLDTFESQMIDYFKSNANAIAIKSSIYSNGRQNDGGEIDNCNVHTSDNRMDLTEDLLHLVFSFLSQRDLCKAGAACKQWQVASMHEDFWRCLNLKDAEVSQANFEALCHRFPNATEVNLFGVLNADILALEAMTSLRCLETLYLGKGQLGDGFFQALIDCPSLNSLSIYDTSFGSGIQEVSVHHDRLHELNIIKCRVHRVTIRCPQLQTLALRRTSMAHALLSCPHLHELDLSSCHKLSDTGIRSAATSCPLLASLDLAFCSCISDETLREIAFSCPNICVLDASYCPNISLESVRLPMLIDLKLHNCEGITSASMSAISYSRMLEALQLDNCSLLTSVSLDLPHLRSISLVHCRKFLDLNLRSPVLSYVKVSNCSLLHCISIVSDALKKLVLQKQESLSNLLLQCNNLQEIDLSDCESLSNSVCEIFSEGGGCPVLKSLVLDNCESLTTVKLHCYSLVSLSLVGCRAINALNLSCPKLLNINLDGCDHLKKASFCPVGLEYLNLGICPKLSVLQIEAPKMSLLELKGCGMLSQASICCPSLTSLDASFCRKFTDDSLSSTTVSCTQIESLNLSSCLAVAFDGLSSLHWLHCLTQLDLSYTFLMNLQPVFDSCHQLVILKLSACKYLRDPSLDALYNKGALPALRELDLSYSSIGQAAIVDLLSCCANLVNVNLNGCVYMHELSWDSSSFQPVGMPINPLSNLLPSGNSGGQCSELNHLLEVLNCIGCPYLKRVVIPLTTCCFHLAKLNLNLSTNLKEVDLSCPNLNSLNLSNCSSLEILKLDCPRLINIQLTACSMLSDAAVQAAISGCCNLETLTLHSFTKVRLLQRTPAT

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	23.860
SRP064423	SRR2545915	Juvenile tuber	23.470
SRP108465	SRR5643513	five period of Gastrodia elata	13.910
	SRR5643514	five period of Gastrodia elata	13.060
	SRR5643515	five period of Gastrodia elata	12.730
	SRR5643524	five period of Gastrodia elata	13.370
	SRR5643525	five period of Gastrodia elata	10.060
	SRR5643528	five period of Gastrodia elata	7.780
	SRR5643658	five period of Gastrodia elata	7.830
	SRR5643659	five period of Gastrodia elata	18.130
	SRR5643660	five period of Gastrodia elata	22.590
	SRR5643661	five period of Gastrodia elata	18.240
	SRR5643662	five period of Gastrodia elata	18.990
	SRR5643663	five period of Gastrodia elata	17.850
	SRR5643664	five period of Gastrodia elata	18.380
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	18.720
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	14.530
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	18.790
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	20.900
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	24.970
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	28.250
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	26.040
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	26.540
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	18.670
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	25.860
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	13.680
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	13.680
SRP279888	Gastro	Gastrodia elata tuber	21.99
	Juven	Juvenile tuber	25.86
	Mother_Gastro	Mother tuber of Gastrodia elata	15.47
	Mother_Juven	Mother tuber of Juvenile	21.07