Detail information of GWHGAAEX014080/evm.TU.scaffold_56.52
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG1561 | 7.00E-40 | CCAAT-binding factor, subunit B (HAP2) |
| nr | gi|743839364|ref|XP_010936981.1| | 4.76E-85 | PREDICTED: nuclear transcription factor Y subunit A-3-like [Elaeis guineensis] |
| Swissprot | tr|Q93ZH2|NFYA3_ARATH | 2.00E-40 | Nuclear transcription factor Y subunit A-3 |
| trEMBL | tr|M0TR23|M0TR23_MUSAM | 1.00E-63 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr8P16700_001} |
| TAIR | AT1G72830 | 7.00E-40 | nuclear factor Y, subunit A3 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000066 | 2583385 | 2608337 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX014080
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module2 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF02045.14 | CBFB_NFYA | 204 | 260 | 9.10E-27 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | NF-YA |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K08064 | NFYA | Antigen processing and presentation | map04612 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0016602 | Cellular Component | CCAAT-binding factor complex |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 38.820 |
| SRR2545915 | Juvenile tuber | 30.030 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 13.830 |
| SRR5643514 | five period of Gastrodia elata | 13.310 | |
| SRR5643515 | five period of Gastrodia elata | 16.010 | |
| SRR5643524 | five period of Gastrodia elata | 13.660 | |
| SRR5643525 | five period of Gastrodia elata | 10.650 | |
| SRR5643528 | five period of Gastrodia elata | 6.690 | |
| SRR5643658 | five period of Gastrodia elata | 8.150 | |
| SRR5643659 | five period of Gastrodia elata | 41.190 | |
| SRR5643660 | five period of Gastrodia elata | 42.720 | |
| SRR5643661 | five period of Gastrodia elata | 56.800 | |
| SRR5643662 | five period of Gastrodia elata | 62.750 | |
| SRR5643663 | five period of Gastrodia elata | 26.070 | |
| SRR5643664 | five period of Gastrodia elata | 61.950 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 21.120 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 23.300 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 16.400 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 27.390 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 25.740 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 28.050 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 22.060 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 21.890 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 12.240 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 14.520 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 14.050 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 14.050 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 64.48 |
| Juven | Juvenile tuber | 74.29 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 30.80 | |
| Mother_Juven | Mother tuber of Juvenile | 46.38 |