Gene detail

Detail information of GWHGAAEX014088/evm.TU.scaffold_56.62

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG4271	7.00E-168	Rho-GTPase activating protein
nr	gi\|672114090\|ref\|XP_008775345.1\|	0	PREDICTED: rho GTPase-activating protein 7-like isoform X2 [Phoenix dactylifera]
Swissprot	tr\|Q8RWQ4\|RGAP7_ARATH	2.00E-169	Rho GTPase-activating protein 7
trEMBL	tr\|M0U7R9\|M0U7R9_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_AchrUn_randomP09590_001}
TAIR	AT5G12150	7.00E-168	Rho GTPase activation protein (RhoGAP) with PH domain

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000066	2715196	2762613	-

Transcript Sequence
>GWHTAAEX014088 TCCCTCCTAAAAATAAATCTACCGTATGACATTCTCTTCCGCTCCTCCTCTGCGATGCTTTCCTGCCACCCATTCCTCTCCCCTTCGGATCTTGGATTCATTTCATCCACATGCTGCGATCGCTCTTTTTCTCCTCCTTTGTAACAAATGGCTTCGCTTCAAAAAAATGAAAATCCAATGCAATTAGCGACATGTAGATGCGGGGAAGGGGAAAACAATATATGGACAGCACGGGGCAATGAAAGTTCTGATAACCAGTCAATTAGCTGCCCTAAATGTGAGATCTTGAAAAGCGGACCTCTGTTTATATCATATAAAGGAATTGGATGGACATCTTGGAAAAAGCGCTGGTTTGTTCTTTCACGTAAATCATTGATGTTTTATAGAGTTGACCCTAATGCTCTACCTCAAAAAGGAAGTGAAGCACCAAACCCTACCCTTGGTGGCATTGAACTAAACAACTCAGGGAGTGTGGTTGTGAAAGCAGAAAAAAAACTCCTTACTGTTCTTTTTTCTGATGGACAAGATGGGAGAACTTTTACACTTAAGACCGAAACTTTAGACGAACTAAATGATTGGAAAGCTGCATTAGAAGGTGCTTTGGCACGAGCGCCTTGCGCAACTAATGTACTGGGGAAAAGTGGAATCTTTTGTAATGAAACAGTCGACTCATTTGAAGCTTCAGCTGAGCAGTGCAAGGATAAACCTGACAATACCTCTTCAATTATTGGGAGACCAGCTTTACTTGCTCTTGAAGATATTGACGGGTCTCCATCTTTCTTAGAGAAGGCCCTTAGGTTCATTGAGGGATATGGAGTCAGAGTGGAAGGCATCTTACGGCATTCTGCTGTTGCTGACCAGGTCGTGCGCAGGGTTAAGGAATATGAGCAAGGGAAATCTGAGTTTACTCCTGATGAAGATGCTCATGTTATTGGTGATTGCATTAAGCATGTGCTTCGAGAAATGCCATCATCCCCTGTTCCAGCATCTTGTTGTGCAGCTCTCGTTGATGCTTATAGAACTGATCGTGGATCCAGAGTTGATAACATTCGAGACACAATATATGAGACCATTCCTGAGCCTAATCGTCGTTTGTTACAAAGGGTACTCCAGATGATGCTAACTGTTGGTGCCCACAAAGCTGACAATAGGATGAGTCTTTCCGCTTTGGCAGCTTGCATGGCACCATTGCTTCTTCGCCCACTTCTAGCTGGTGAATGTGAACTCAATAATGATTTTCAAATGGATGGTGATGGATGCTTCCAGCTTTTGCAAGCTGCTGCTGCAGCAAACCATGCTCAAGCTATACTGATTATTCTTCTTGAGGAATATGAAAAAATCTTTGATCAGGATGGCTCTTTCTCTTCAGAACTTTACACCGAGTCAGAAGATGAAGATATTGAGGATGATGAGTCAACTGAGAATGATATTCCTGAAGAGTATGGATATCATGATGCTGAGAATGACTTGCAAATAGATGCAGAAGGTGATGCTGATAATTCTTGCAGTGCAACCCCCAGCCAAAGTGATAACGATGTTGGTAGTGATTTGGGTAGTGATATTGGCAGTAATACAAACAGGTATGCTTACAGTGACACAGGTGGGAATGTTGAGAGCGATGCTGGCAGTAGCATCAGAGGTGCTTCCTGCAATAGTGGTATTGTCAGGAGTGATGCAGGCATTGATGTAGGGAGTAACATGACAAGAGACCAGGAGATTAAAGACAGCTGTGCTCATCTTTTATCTGCTAGAAATACTGAGGTTGTTGAAAACAGTATGATAATTTCAAATAAATTCTCTGCATCTCCGCATGAAGATATTGACCTCAAAACATCTAGGGTTCAGTTGCCAGCTGATGCTCTATCCTTTGACCATACTGATGCACATAAAGATAGTGATTTTCCAAGTGAAAAATCCAACTCAATTGTTCCTCTTCAAGAAAAATCAAAAGCAGTGCAACCTACTATGCGAAATAAATGGGGGCGCAGTTCTGCAAGGAAAAACCTTTCGATGGAGTCACTTGAATACATCAGTGATGATGAATCTGCTGTTCAAAGGCTTGAGAATGCCAAGATTGATCTTCAAATTAAAATTTCAGAAGAGATAAAAGTGAATGCAATTTTGCAATCAAATTTTGTTGGGGGAAAGAAATTTTTGCGTGAACGTCGCTTGACTCTGGAGAAAGATGTGGTAAGGTTGAAAGAGCAATTGCAGAAAGAGAGAGATTTAAGATCACACATTGAGTCTTGTTTGATGGACACACAGCACTACCCTTTATCCACCATTGGTAGTTTAGATAACAATATTTTAGCCGATCTTGAAGAAAATGCAGTTTCAGTAAGAGATATTAAGAATTTGAAGCCGAATATTACTGATGCCACTAAGCACCTGCAGCAAGGCCAGACCACCTTTTGCCAATCCTGTGGTCAGCCTATCTATACAAGCAATCAACGACAGGAAAATGTCAACAATATTCAGAATGAGCATGTTGATGATAAATTGTTGAATCATGACAACACTTATTTTAAGGTAGACCAAGTTGATTCGAACAATAAGCAAACTAGAGGTTCGCCATCTTCAAAAAAGAAACGCCGCCCATTCCTGGAGCGCTATCAATGCTGGTCAAATCATGACAGCAGGATCTCTCTAGGCTTAGCTGGTGTTTTACCTAAGGAGGACACAACAATTAGCCCTGAACTTGTAGAAGAAAATGGTGATGCTATTATGGAGAAACTCTCTTCAACCGCTAAGAATTCTAGGACCAATTCTTGTACTGAGAATCTGAAAGTTGAGGTCAAAAATACAACTTATTTAGAGAAAGGACGGGCTCACCAAAAACTGCTGCCGAGAATTTCAAACCCAAGTGCTGCTAAATATTCGGAGGCCTCAACATCTGAAGATCGCCGCGGCACAATAAAGAAGATTGAAAGATGGGAAAACACTAAGAGGGATGCGTCAGAATATCTTTCTTCTTGGAAATTGACTTCTTCCCAGAAGAAGCAGCCGAGTGCTCATACTCTAAAGAGCGAGGAGGGATATGCGTCTTCTTTAACGGTGACCAAGATAACAAACCGGCTGAATTTTCTCAAGGAAAGAAGGGTTCAGCTTGCCAACGAGGTACAGAATTTGGACTCGAATCGTGCCATGAGCCTGAAGCCCTGTTGAAAAATGAGATGATGCTACAGTACCCAACTCACAGCTCAAAAAAGTTAACGATGGCATTCCAAATGTAAAGTGTAAATGAGATATTTTGGGTGTATTTTATAGCATTCAGCTGGGCATTTTAGCATCCTCTAACAACAAATCTGCATATAAGGAACTTCCCTTTACTTGTGTAGCTGTTCATTGCAATAATTCTCTGCATTCTGAAAGCTCTTCGTCTCAAAATATTTCACATGATAATTAATGATGGTTATTTCAGTTGGAGCGCACCCAATTTTTATTTTGAA

Network for GWHGAAEX014088

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module1

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00169.28	PH	48	152	5.70E-11
PF00620.26	RhoGAP	209	352	4.20E-25
PF14389.5	Lzipper-MIP1	671	740	7.90E-07

Protein Sequence

>GWHPAAEX014088
MASLQKNENPMQLATCRCGEGENNIWTARGNESSDNQSISCPKCEILKSGPLFISYKGIGWTSWKKRWFVLSRKSLMFYRVDPNALPQKGSEAPNPTLGGIELNNSGSVVVKAEKKLLTVLFSDGQDGRTFTLKTETLDELNDWKAALEGALARAPCATNVLGKSGIFCNETVDSFEASAEQCKDKPDNTSSIIGRPALLALEDIDGSPSFLEKALRFIEGYGVRVEGILRHSAVADQVVRRVKEYEQGKSEFTPDEDAHVIGDCIKHVLREMPSSPVPASCCAALVDAYRTDRGSRVDNIRDTIYETIPEPNRRLLQRVLQMMLTVGAHKADNRMSLSALAACMAPLLLRPLLAGECELNNDFQMDGDGCFQLLQAAAAANHAQAILIILLEEYEKIFDQDGSFSSELYTESEDEDIEDDESTENDIPEEYGYHDAENDLQIDAEGDADNSCSATPSQSDNDVGSDLGSDIGSNTNRYAYSDTGGNVESDAGSSIRGASCNSGIVRSDAGIDVGSNMTRDQEIKDSCAHLLSARNTEVVENSMIISNKFSASPHEDIDLKTSRVQLPADALSFDHTDAHKDSDFPSEKSNSIVPLQEKSKAVQPTMRNKWGRSSARKNLSMESLEYISDDESAVQRLENAKIDLQIKISEEIKVNAILQSNFVGGKKFLRERRLTLEKDVVRLKEQLQKERDLRSHIESCLMDTQHYPLSTIGSLDNNILADLEENAVSVRDIKNLKPNITDATKHLQQGQTTFCQSCGQPIYTSNQRQENVNNIQNEHVDDKLLNHDNTYFKVDQVDSNNKQTRGSPSSKKKRRPFLERYQCWSNHDSRISLGLAGVLPKEDTTISPELVEENGDAIMEKLSSTAKNSRTNSCTENLKVEVKNTTYLEKGRAHQKLLPRISNPSAAKYSEASTSEDRRGTIKKIERWENTKRDASEYLSSWKLTSSQKKQPSAHTLKSEEGYASSLTVTKITNRLNFLKERRVQLANEVQNLDSNRAMSLKPC

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0007165	Biological Process	signal transduction

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	6.680
SRP064423	SRR2545915	Juvenile tuber	4.890
SRP108465	SRR5643513	five period of Gastrodia elata	2.820
	SRR5643514	five period of Gastrodia elata	3.060
	SRR5643515	five period of Gastrodia elata	2.790
	SRR5643524	five period of Gastrodia elata	3.270
	SRR5643525	five period of Gastrodia elata	15.580
	SRR5643528	five period of Gastrodia elata	14.340
	SRR5643658	five period of Gastrodia elata	16.500
	SRR5643659	five period of Gastrodia elata	3.750
	SRR5643660	five period of Gastrodia elata	2.820
	SRR5643661	five period of Gastrodia elata	3.330
	SRR5643662	five period of Gastrodia elata	3.200
	SRR5643663	five period of Gastrodia elata	2.930
	SRR5643664	five period of Gastrodia elata	2.570
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	2.900
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	3.780
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	3.440
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	2.980
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	2.580
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	2.310
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	3.060
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	3.760
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	3.860
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	3.050
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	3.770
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	3.770
SRP279888	Gastro	Gastrodia elata tuber	2.85
	Juven	Juvenile tuber	2.33
	Mother_Gastro	Mother tuber of Gastrodia elata	5.83
	Mother_Juven	Mother tuber of Juvenile	5.22