Detail information of GWHGAAEX014090/evm.TU.scaffold_56.64


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG26993.00E-123Predicted ubiquitin regulatory protein
nrgi|720049020|ref|XP_010271316.1|3.86E-141PREDICTED: UBX domain-containing protein 6 [Nelumbo nucifera]
trEMBLtr|M0U0M0|M0U0M0_MUSAM9.00E-139Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr9P15620_001}
TAIRAT2G016503.00E-123plant UBX domain-containing protein 2

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000006628261392856790-
Transcript Sequence

Network for GWHGAAEX014090

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF09409.9PUB1221951.10E-16
PF00789.19UBX3003500.00012
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K14011UBXN6, UBXD1 Protein processing in endoplasmic reticulum map04141

Gene Ontology

GO term OntologyName
GO:0006281Biological ProcessDNA repair
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms21.890
SRR2545915Juvenile tuber19.740
SRP108465SRR5643513five period of Gastrodia elata18.910
SRR5643514five period of Gastrodia elata20.140
SRR5643515five period of Gastrodia elata16.050
SRR5643524five period of Gastrodia elata18.720
SRR5643525five period of Gastrodia elata22.540
SRR5643528five period of Gastrodia elata23.580
SRR5643658five period of Gastrodia elata23.350
SRR5643659five period of Gastrodia elata15.470
SRR5643660five period of Gastrodia elata12.690
SRR5643661five period of Gastrodia elata15.760
SRR5643662five period of Gastrodia elata16.690
SRR5643663five period of Gastrodia elata15.020
SRR5643664five period of Gastrodia elata16.430
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_115.630
SRR6049655Rhizomagastrodiae_C368-T10_good_119.300
SRR6049656Rhizomagastrodiae_C368-T07_good_118.130
SRR6049657Rhizomagastrodiae_C368-T07_good_120.230
SRR6049658Rhizomagastrodiae_C368-T04_good_118.020
SRR6049659Rhizomagastrodiae_C368-T04_good_120.160
SRR6049660Rhizomagastrodiae_C368-T01_good_120.060
SRR6049661Rhizomagastrodiae_C368-T04_good_118.020
SRR6049662Rhizomagastrodiae_C368-T01_good_117.280
SRR6049663Rhizomagastrodiae_C368-T01_good_117.520
SRR6049664Rhizomagastrodiae_C368-T10_good_120.620
SRR6049665Rhizomagastrodiae_C368-T10_good_120.620
SRP279888GastroGastrodia elata tuber 16.46
JuvenJuvenile tuber23.04
Mother_GastroMother tuber of Gastrodia elata 26.05
Mother_JuvenMother tuber of Juvenile 23.18