Gene detail

Detail information of GWHGAAEX014102/evm.TU.scaffold_56.78

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG1883	Cofactor required for Sp1 transcriptional activation, subunit 3
nr	gi\|743774582\|ref\|XP_010917649.1\|	PREDICTED: mediator of RNA polymerase II transcription subunit 23 [Elaeis guineensis]
Swissprot	tr\|F4I4P3\|MED23_ARATH	Mediator of RNA polymerase II transcription subunit 23
trEMBL	tr\|W5GY31\|W5GY31_WHEAT	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Traes_6DL_95223E1E7.2}
TAIR	AT1G23230	Unannotated protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000066	3120250	3237148	-

Transcript Sequence
>GWHTAAEX014102 CACGAACACACGCACAAATTCTAAGCTGTAATTAGGAAGCCAAATCACTTGAATCCATTGAACCCTCATCCTCAGCCAGTCCGTCTCTTTGCTTCAGTGAACTCCAGGAGTCCCTTCAAAAACCTCGAAAACGGAAAGCGCGAGCAAGGAGACGAACGCACTAATGGACAATAGTCAGAGGACTTCCAGACCTGTTCAGTTCCATCCAGGCAGGAATGCCATCGTTGATCTCTTCAACCTTTATCTTGGGAGGAATTCACGGCAGAAATCCGACGATGTTTCTCGAGAAACCCCAAACAAGATGCAGAAGAGAGTAACTGCTCCCAACAGAGAGCTTCCTCCTCGAAATCAGCAGTTTCTATTAGATTTTGAGCAATTGCAAGGACAATTCCAAGATCAGGAGCAACTGTGTGCTGTGACAGAATCAGTTCTAATTGCCTTTGTGGTTCAGTGCTGTGCCCATTTACCACAATCTGAATTTCTTCTTTTTGCAATAAGAAGCTTGTGCAGTGTAGGCTACGTCAGATGGGATTCATTTCTCCCATCACTACTTTCCACTATCTCTTCTGCTGAGGGATCATCTGGACCAGGGAGTCCTACAATGACAGGAAGCTTATCTACTTCTATTGCAGGTTTATTAATGACTCCTCTTACTGTTTCAGGAACTAATACTTCTACTTCCCTTGTATCTACCCCACCATCTCCCCTTCCCTCAATGCATGGTATCGGATCTCCAGCTCAATCTACAACTGATCAGTCTTCTGGGCAAAATCTCTCGCCAGTTAAGCCTTCCGAACTCTCTGGCTCTGGCCAACATTCCGCTACGAAGGTAACTCAATCAGCCAGGACCGCTATAAGCCATCTACGCCAATTAGCAAGCAAAATTATTTTCACTGCTCTTGAGTCCAACCTAAAACCATTAACCACTGCAGAAATTTTCTCTCACATGACTAATTGGTTAATTAATTGGGATCAAAGAAATCTAGGCATTGATGAATCTGCTACTGCAAAGGGTTGGAAGCCCGAGTGGCCTTCATTTGAATGGATGCGCAGTTGCTTGGATGTTATATGGAAGTTGGTTGATGAAGATAGATGTCTCATTCCCTTCTATGAGCTGATTCGAAGTGGGTTACAATTCATTGACAACATTCCTGATGATGAGTCTTTGTTTGGGATCATTTTGGAGATCCATAGGAGGAGGGATATGGTAGCCTCCCACATGCAAATGTTAGATCAGCACCTTCATTGTCCTTCTTTTGGAACTCATCGCTTTTTGTCTCAAACTTATCCAAATGTACCTGGTGAATCAATAGCAAATCTTCGTTATTTGCCGATTACCTATCCGAGTGTTTTGGGAGAACCGTTGCATGGAGAGGAGCTTGCCTTTTCTATACAAAGAGGTAGTTTAGATTGGGAGAGGGCACTTCGTTGCCTTAGGCATGCCCTTCACACAAATCCATCTCCAGATTGGTGGAGGCGTGTACTTCTTGTTGCTCCTTGCTATAGGCAGCAAGCTCAGCCTCTAACTCCTGGAGCAGTTTTTTCTCCAGAAATGATTTGTGATGCTGTTATTGAACGAACTATGGAATTAATAAAATTGACAAACTCAGAAGTTCAATGTTGGCAGGATTGGATTATGTTTGCAGATATTTTTTTTTTTCTGATGAAGAGTGGATGCATTGATTTCCTTGATTTTGTTAACAAACTTGCCTCTAGAGTTTCTCAAGGGGATCAACCAATTCTTCGAACTAATCATGTGACCTGGTTGCTTGCACAAATTATTCGTATTGAGGTTGTAATGAACACTTTAAGCTCAGATCCAAAAAAGGTTGAGACAACCAGAAAGATCATTTCCTTCCACAAGGAAGATAAGAATCCTGATGCAAGCAACACTAGTCCACCAAGTATTCTTCTGGACTTTATAAGTAGTAGTCAAACTCTACGTATTTGGTCCTTCAACTCTTCAATTAGAGAATATTTAAATAATGACCAACTCCAGAAAGGGAAGCAAATAGATGAATGGTGGAAACAGGTGACAAAAGGTGAGCGCATGATGGATTTTATGAACGTGGATGATAGATCAATGGGTATGTTTTGGGTTCTTTCATACACCATGGCACAACCAGCCTGTGAAGCTGTGATGAACTGGTTAACCTCTTCCGGCGTAACTGAAATTTTACATGGACCCAATGTACAGTCTAATGATAGAATGATGATGATGCGCGAAACTTGCCCTCTTTCCATGTCATTACTTTCTGGCTTATCAATTAACTTATGCTTGAAACTAGCATTCCAACTTGAAGAAGCAATATTTCTTGGACAGGTTATTCCTAGCATTGCCATGGTGGAAACATATGTTAGACTACTGTTGATTGCTCCACACTCGCTTTTCCGTCCGCATTTTACGACTTTGACCCAGCGATCACCATCAATTTTGAGCAAGCCTGGTGTTTCCTTATTGCTTCTTGAAATATTGAACTACAGGTTGTTACCACTATACAGGTACCATGGAAAGAACAAGGCTCTTATGTATGATGTGACAAAGATAATATCAATGATAAAGGGTAAACGTGGAGAACACCGACTTTTTAGACTGGCTGAGAATTTATGCATGAATTTGATCCTTTCAATAAGGGACTTTTTCCTAGTAAAGAAAGAGTTAAAGGGACCTACTGAATTTACTGAAACACTTAATCGTATGACAATTATTAGCCTTGCTATTACTATTAAAACTCGTGGTATTGCTGAGGTTGAGCAGATGCTTTATCTTCAGCCATTATTGGAGCAAATAATGGTAACTAGTCAACACACTTGGTCAGAAAAGACGTTGAGATACTTTCCTCCACTTATAAGAGACTCCTTAATTGGTAGAATGGATAAGAGGGGGCAGTCTATTCAAGCATGGCAGCAGGCAGAAACAACGGTGATAAACCAGTGCACTCTGCTTCTTTCTCCTTCTGCTGATCCAACTTATTATATGAAATATCTTAATCATAGCTTCCCTATACATCGGCAATATCTTTGTGCCGGTGCTTGGGTGTTTATGAATGGACTCCCTGATAGTATTAGCAGTGCAAACCTTGCACGTGTCCTGAGGGAATTTTCTCCTGAAGAAGTGACGTCAAATATTTACATGATGGTTGATGTACTTCTGCATCATATTCAGTTGGAGCTACAGAGGGGACATGCAGCGCAGGACCTTCTGGCAAAAGCAATTTCAGGCATTGCTTTTTTCATTTGGACACATGAGCTGCTTCCTCTTGATATTTTGCTTCTAGCACTAATAGACAGGGATGACGATCCTTATGCATTGCGAATTGTGATAAGCTTGCTTGACCGAACAGAGCTCCAGCAGAGGATCAAAATGTTCTGCTCAAGCCGCATTTCACCTGAACATTGGCTCAATAACCAGCCTCCAAAAAGAGTTGAGATTCAAAAAGCCCTTGGGAACCATCTTGTGTGGAAAGATAGGTACCCTCCTTTCTTCGATGATATTGCAGCAAGGCTGGTCCCTGTGATCCCACTAATTATTTATAGGCTTATTGAAAATGATGCTACTGATATTGCTGAAAGAGTTCTGGCATTGTATTCTTCTCTTCTGATTTTCCACCCGCTGAGATTTACTTTCGTTAGAGACATCCTTGCATACTTTTATGGCCATCTTCCAAGCAAGCTTATTGTCCGTATACTCAAAGTTCTTGATATTTCAAAGATCCCCTTATCAGAATCATTTCCTCAGTATGTTTCATCAAATCCACCCATCTGTCCTCCAGTGGACTACTTTGCTACTCTTTTGCTAGGCTTGGTGAATAATGTTGTTCCTCCATTAAATAGCAAGTCGAAACCTGAGACTGCAGGCGAACCGTCCAGCCTCTCTGGCCGTCAGCCAATAAGCAAAAGTCAGGCGTCCTCTCAGTCAGCATCCATCAACAATGCCGAAGGGCTGAGGGCATTCTACCAGAATCAGGATCCGGGATCCTATACTCAACTTGTTCTCGAAACGGCAACCATTGAAATTCTTTCACTTCCGGCCACAGCGTCCCAAATAGTATGTTCGCTCGTTCAAATTGTTGTTAATGTGCAGCCAACGCTGATTCAGTCTACGAATGGCCTTCAGGGGCTGTCTGGGGTTTCTGGGCAGACCTCCGGCCTCCCGACTTCTCCGTCAGCCGTAGGGTCTGAATCATCTGGTGCAAATCGGTCGGCTCCTGCTACTGGCATAAATGCAGCAAATTTTGTTTCCAAAAGTGGTTACTCATGCCAGCAGCTGTCCTGTTTAATGATTCAAGCATGTGGGCTTCTTTTAGCCCAGCTCCCACCTGAGTTTCACCTGCAACTCTATTCCGAGGCTTCCCGTATAATTAAGGAATGCTGGTGGCTCACAGATGGCATCAGGTCAATAAAAGAGCTGGATTCAGCTGTTAGCTATGCTTTGGTGGATCCATCATGGGCTGCCCAAGACAATACTTCGACTGCCATAGGAAATATAGTTTGCCTTCTTCATTCTTTCTTCAGCAACCTTCCACATGAGTGGCTGGAATCCACACATACCATCATCAAGCATCTTCGCCCTGTGACATCCATCGGAATGATGAGGATCGCTTTCCGTATAATGAGCCCGTTGCTCCCTCGTCTTGCCTTTGCCCGCCCTCTTTTCATGAAGACACTTGCGCTTCTGTTCAATGTAATGGCTGATGCCTTTGGGAAGAACTCACAGCCTGCCACTCCTGTGAAGGCTTCAGAGATAAGAGATCTGATCGATTTCATGCATCATGCTGTGATGTATGAAGGGCAAGGTGGGCCAGTGCAGTGCAGCAGTAAGCCAAAGTTTGAGATTCTGACGCTGTGTGGGAAAGTGTTGGAGCTGCTGAGGCCGGACGTGCAGCATCTCTTCACCCATCTGCAGACGGATCCCAACTGCTCAGTCTACGCAGCAACTCACCCAAAGCTGGCTCAGAATCCTTCTTGACAACCCCAAGCGGGTCTGTATTTATGTAAATTTTGATTGTTTTTGCGTTTTTTTCTTGGATTTTTTTAATTATCAAATGTTGCTCTAATGTATTTATTCATATTGTATTTATTATGAATAAAGTACCAAACTAGCTTTTATTATTATTTTTTTATGACAATTGAATGATAGTTTTTTTTCAAGAACCGAAAGAATAGATTATAAC

Network for GWHGAAEX014102

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF11573.7	Med23	668	1215	4.10E-30

Protein Sequence

>GWHPAAEX014102
MDNSQRTSRPVQFHPGRNAIVDLFNLYLGRNSRQKSDDVSRETPNKMQKRVTAPNRELPPRNQQFLLDFEQLQGQFQDQEQLCAVTESVLIAFVVQCCAHLPQSEFLLFAIRSLCSVGYVRWDSFLPSLLSTISSAEGSSGPGSPTMTGSLSTSIAGLLMTPLTVSGTNTSTSLVSTPPSPLPSMHGIGSPAQSTTDQSSGQNLSPVKPSELSGSGQHSATKVTQSARTAISHLRQLASKIIFTALESNLKPLTTAEIFSHMTNWLINWDQRNLGIDESATAKGWKPEWPSFEWMRSCLDVIWKLVDEDRCLIPFYELIRSGLQFIDNIPDDESLFGIILEIHRRRDMVASHMQMLDQHLHCPSFGTHRFLSQTYPNVPGESIANLRYLPITYPSVLGEPLHGEELAFSIQRGSLDWERALRCLRHALHTNPSPDWWRRVLLVAPCYRQQAQPLTPGAVFSPEMICDAVIERTMELIKLTNSEVQCWQDWIMFADIFFFLMKSGCIDFLDFVNKLASRVSQGDQPILRTNHVTWLLAQIIRIEVVMNTLSSDPKKVETTRKIISFHKEDKNPDASNTSPPSILLDFISSSQTLRIWSFNSSIREYLNNDQLQKGKQIDEWWKQVTKGERMMDFMNVDDRSMGMFWVLSYTMAQPACEAVMNWLTSSGVTEILHGPNVQSNDRMMMMRETCPLSMSLLSGLSINLCLKLAFQLEEAIFLGQVIPSIAMVETYVRLLLIAPHSLFRPHFTTLTQRSPSILSKPGVSLLLLEILNYRLLPLYRYHGKNKALMYDVTKIISMIKGKRGEHRLFRLAENLCMNLILSIRDFFLVKKELKGPTEFTETLNRMTIISLAITIKTRGIAEVEQMLYLQPLLEQIMVTSQHTWSEKTLRYFPPLIRDSLIGRMDKRGQSIQAWQQAETTVINQCTLLLSPSADPTYYMKYLNHSFPIHRQYLCAGAWVFMNGLPDSISSANLARVLREFSPEEVTSNIYMMVDVLLHHIQLELQRGHAAQDLLAKAISGIAFFIWTHELLPLDILLLALIDRDDDPYALRIVISLLDRTELQQRIKMFCSSRISPEHWLNNQPPKRVEIQKALGNHLVWKDRYPPFFDDIAARLVPVIPLIIYRLIENDATDIAERVLALYSSLLIFHPLRFTFVRDILAYFYGHLPSKLIVRILKVLDISKIPLSESFPQYVSSNPPICPPVDYFATLLLGLVNNVVPPLNSKSKPETAGEPSSLSGRQPISKSQASSQSASINNAEGLRAFYQNQDPGSYTQLVLETATIEILSLPATASQIVCSLVQIVVNVQPTLIQSTNGLQGLSGVSGQTSGLPTSPSAVGSESSGANRSAPATGINAANFVSKSGYSCQQLSCLMIQACGLLLAQLPPEFHLQLYSEASRIIKECWWLTDGIRSIKELDSAVSYALVDPSWAAQDNTSTAIGNIVCLLHSFFSNLPHEWLESTHTIIKHLRPVTSIGMMRIAFRIMSPLLPRLAFARPLFMKTLALLFNVMADAFGKNSQPATPVKASEIRDLIDFMHHAVMYEGQGGPVQCSSKPKFEILTLCGKVLELLRPDVQHLFTHLQTDPNCSVYAATHPKLAQNPS

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	25.590
SRP064423	SRR2545915	Juvenile tuber	27.410
SRP108465	SRR5643513	five period of Gastrodia elata	20.710
	SRR5643514	five period of Gastrodia elata	24.460
	SRR5643515	five period of Gastrodia elata	19.970
	SRR5643524	five period of Gastrodia elata	20.990
	SRR5643525	five period of Gastrodia elata	19.800
	SRR5643528	five period of Gastrodia elata	13.500
	SRR5643658	five period of Gastrodia elata	19.440
	SRR5643659	five period of Gastrodia elata	23.720
	SRR5643660	five period of Gastrodia elata	28.890
	SRR5643661	five period of Gastrodia elata	23.010
	SRR5643662	five period of Gastrodia elata	24.190
	SRR5643663	five period of Gastrodia elata	30.150
	SRR5643664	five period of Gastrodia elata	29.480
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	19.030
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	21.930
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	18.250
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	21.500
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	17.570
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	19.220
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	19.860
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	19.090
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	15.360
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	15.540
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	16.100
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	16.100
SRP279888	Gastro	Gastrodia elata tuber	40.29
	Juven	Juvenile tuber	58.10
	Mother_Gastro	Mother tuber of Gastrodia elata	22.97
	Mother_Juven	Mother tuber of Juvenile	44.10