Gene detail

Detail information of GWHGAAEX014106/evm.TU.scaffold_56.83

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|672161624\|ref\|XP_008800636.1\|	6.68E-131	PREDICTED: zinc finger CCCH domain-containing protein 18-like isoform X2 [Phoenix dactylifera]
Swissprot	tr\|Q9SJ41\|C3H18_ARATH	1.00E-86	Zinc finger CCCH domain-containing protein 18
trEMBL	tr\|M0TKS1\|M0TKS1_MUSAM	3.00E-122	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr7P25850_001}
TAIR	AT2G05160	4.00E-86	CCCH-type zinc fingerfamily protein with RNA-binding domain

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000066	3367285	3373270	+

Transcript Sequence
>GWHTAAEX014106 GGCATGATTATGTTTCACCCATGATTACATTAGTTTTGCTAGCAAATTCTTAACCGGAGTTTAATAGCATTTTTCTTGCAGAAAGAGTTTAATATTCCCGAAAATACCAATTTCCAAAACAAATCGCTGTTATGAATGTCGATGCTTGTTTTATGATAACTTTGTTTGTTTTCCAATTCCTCGATTTCTTAAACAAAGCGCTGGTTGTCTTTATATAATTGAACCCACGCCGTCTTCTTGTATTTCAGCGGGCAGATTCCGGACGAGTGAGGACTGTGGAGTGTTGCTGTTAAAGAGAACGGTATTTAAAGAGAAAAGTTAGTGATGGAGATTGGAAATTACATCCAGCGAGTTCTCCAAAGAATTCAGAAAGTGGAACCAGAAAATGCTACCAAAATCTTTGGCTATCTTCTTTTGCGGCACAGTCTTGAGGAGTTAATGGAATATGCAGTGGGGGATGAAGAGCAGATGCATTCTCTAATTGCTGAGGCAAAATTTTATCTCTTGCCATCACTCAAACTCAAACCCTCCGAACATTTACATCCATTGCCTTCCTTTAACCGCATTCCTCATCTCTCATTCTCTTCTCATTCAAATCCTCGTGTACCGGTACCTCGTCATCAGGACCACATTCCTTGTAATAATGAAGTTTGGGGTATGGAGGACCAGTTACAACCTTTAAGCCCTTCAAGTTTTGATCTTCAAGGTGATAACTACCTACTTGACTGTGGTTTCGGTCTTAGTGGCCAGTCACAGTTGAGCTGTCATCACTTTTACAATGATTATTGTAGGCATGGACTTGGCTGCAATTTTTCCCCTGGTCAATCCTATTCAGATAGTATCACTCAAATGCCTGGGGTTAGTTTGAGTGACCTTACTATGGAAGACAATATGATATTTTCTGTCTGTCTTGAGAAACTTGAGCTGGAGATCGGTGAGATCCTGAAAGCAAGAAGGGGCTTACCTGTTACTATAGCTTCATTGCCTATCTTATATCAAGAGATGTATGGCAAAGCACTTCAGGCTAATGGCTATCATACTGAAAGCCAGAGGCATGCGAAAGCTGGTTTTAGCCTGACCACATTGCTTGCTCAATTGAGAAACATTAGGCTTATGGAAAGACCTCATGGACAGCATTTTGTTGTACTTGTGGAGGATGCTCCAAAATACATGGAAGTAAGGGGTGAAAGGAATGGATATGGAGCTTCTAGTTCTCATCAGATTTATCTTACTTTCCCTGCTGAAAGCACCTTCACTGATGCTGAAGTTCAGAATTACTTCAATCAGTTTGGTCCTGTTCATGATGTGAGGATCCCACGACAAGAGAAAAGGATGTTTGGTTTTGTGAGCTTCTATCATCCGCAGACAGCTAGAAAAATTTTAGCAATGGGTCACCCACACATTATTGGTGGCGCTCGAGTTCTTGTCAAGCCCTATAAAGAAAAATCAAGATTGGTTGAGAGGAAACAAGCAGATAAGGTGGATGCTCAGAAGTGTCCCTCTTCTTTTCCTTTTGACATGGACACAGATCTAGCTTCAAGGATAATATCATGTGACACTTCGAAGTTACATATTAAGCAGCAGATTGAAGATCTTCAACCAGTTTTTGATCTGAAGACAAGACACTTCCTCGATCATCAGCTGAGGCAAATGCCACTTGTTTATGGGTTGGAAGAGCCAGACATTCTAGAAGATCAGTTCAACTCATTGAACATTACATCATTTAATAGTACTGATGACGATAATACTTTGGAGCCAGGCAGCAACTGCAGTGATCCAGATAGGCTCCAGATTGAATTGCCAGACAGCCCTTTTACATCTCCAAGGTTTGGATCTAACGGCCTTTACATGGTAGCATAGCCAAGAAAGTTCAAATAGTTTAGCTCATAGAGTTACAGTTCTGTGGTTAAATATGTAAAGTTCTATACTGAAGTACTTTTTGGTGTTTTAGAGCATTATATTATAGACAGAAGTTGTGATAGTTGGATACAAAAATATTATTGAATAGAACAATTGAATATATACTTGTTTAATTGTTTTGGTTGCCAAAATCTTTTGCTAGTTTTGAAACCTGAAAGTTGTAACAACTTCAGTGAATATTAAATCTGTGATGTAGTGGGCAGACATGTATTGCAATTATTTTTATAATTTTAATAGCCAAGATCTGTTTTTTCACACACACTTAATAATTTGAAACCTAATTCAAATTGTTAGCTGTGGAAATTGTTTCCAACATACAGAATCAATATTGACTAGATAGATCTGATATTGTAGATGGGAAGCAGCCATCGAGGACTGTGAAGCTC

Network for GWHGAAEX014106

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module7

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12872.6	OST-HTH	196	272	1.20E-10
PF00076.21	RRM_1	310	363	5.10E-06

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003676	Molecular Function	nucleic acid binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	100.210
SRP064423	SRR2545915	Juvenile tuber	48.660
SRP108465	SRR5643513	five period of Gastrodia elata	32.490
	SRR5643514	five period of Gastrodia elata	36.640
	SRR5643515	five period of Gastrodia elata	32.780
	SRR5643524	five period of Gastrodia elata	29.910
	SRR5643525	five period of Gastrodia elata	6.040
	SRR5643528	five period of Gastrodia elata	2.950
	SRR5643658	five period of Gastrodia elata	3.900
	SRR5643659	five period of Gastrodia elata	43.860
	SRR5643660	five period of Gastrodia elata	34.680
	SRR5643661	five period of Gastrodia elata	26.790
	SRR5643662	five period of Gastrodia elata	15.910
	SRR5643663	five period of Gastrodia elata	20.920
	SRR5643664	five period of Gastrodia elata	18.310
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	48.700
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	41.270
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	44.190
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	46.500
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	40.040
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	41.120
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	46.190
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	41.000
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	43.390
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	42.580
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	41.420
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	41.420
SRP279888	Gastro	Gastrodia elata tuber	12.81
	Juven	Juvenile tuber	103.65
	Mother_Gastro	Mother tuber of Gastrodia elata	4.54
	Mother_Juven	Mother tuber of Juvenile	16.64