Detail information of GWHGAAEX014109/evm.TU.scaffold_56.87
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|451946527|ref|YP_007467122.1| | 2.00E-45 | N-methylhydantoinase B/acetone carboxylase, alpha subunit [Desulfocapsa sulfexigens DSM 10523] |
| KOG | KOG1939 | 2.00E-70 | Oxoprolinase |
| nr | gi|84663853|gb|ABC60339.1| | 2.42E-72 | putative 5-oxoprolinase [Musa acuminata AAA Group] |
| Swissprot | tr|Q9FIZ7|OPLA_ARATH | 6.00E-71 | 5-oxoprolinase |
| trEMBL | tr|Q2LGK3|Q2LGK3_MUSAC | 9.00E-73 | Putative 5-oxoprolinase {ECO:0000313|EMBL:ABC60339.1} (Fragment) |
| TAIR | AT5G37830 | 2.00E-70 | oxoprolinase 1 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000066 | 3479715 | 3480215 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX014109
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF02538.13 | Hydantoinase_B | 4 | 69 | 1.10E-26 |
| PF02538.13 | Hydantoinase_B | 69 | 132 | 6.60E-13 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K01469 | OPLAH, OXP1, oplAH | Metabolic pathways | map01100 |
| Glutathione metabolism | map00480 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0003824 | Molecular Function | catalytic activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 6.210 |
| SRR2545915 | Juvenile tuber | 4.920 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 3.450 |
| SRR5643514 | five period of Gastrodia elata | 3.540 | |
| SRR5643515 | five period of Gastrodia elata | 6.400 | |
| SRR5643524 | five period of Gastrodia elata | 1.530 | |
| SRR5643525 | five period of Gastrodia elata | 6.480 | |
| SRR5643528 | five period of Gastrodia elata | 3.550 | |
| SRR5643658 | five period of Gastrodia elata | 5.660 | |
| SRR5643659 | five period of Gastrodia elata | 3.050 | |
| SRR5643660 | five period of Gastrodia elata | 3.410 | |
| SRR5643661 | five period of Gastrodia elata | 3.420 | |
| SRR5643662 | five period of Gastrodia elata | 2.110 | |
| SRR5643663 | five period of Gastrodia elata | 3.380 | |
| SRR5643664 | five period of Gastrodia elata | 2.220 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 8.080 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 1.550 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 7.220 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 17.230 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 7.670 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 7.580 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 7.210 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 8.840 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 3.340 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 5.880 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 5.080 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 5.080 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 7.54 |
| Juven | Juvenile tuber | 16.29 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 13.21 | |
| Mother_Juven | Mother tuber of Juvenile | 10.85 |