Detail information of GWHGAAEX014110/evm.TU.scaffold_56.88
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|451946527|ref|YP_007467122.1| | 2.00E-66 | N-methylhydantoinase B/acetone carboxylase, alpha subunit [Desulfocapsa sulfexigens DSM 10523] |
| KOG | KOG1939 | 7.00E-117 | Oxoprolinase |
| nr | gi|514824420|ref|XP_004986868.1| | 5.20E-127 | PREDICTED: LOW QUALITY PROTEIN: 5-oxoprolinase-like [Setaria italica] |
| Swissprot | tr|Q9FIZ7|OPLA_ARATH | 2.00E-117 | 5-oxoprolinase |
| trEMBL | tr|K4ALA1|K4ALA1_SETIT | 5.00E-130 | Uncharacterized protein {ECO:0000313|EnsemblPlants:Si039681m} |
| TAIR | AT5G37830 | 7.00E-117 | oxoprolinase 1 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000066 | 3480427 | 3481110 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX014110
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF02538.13 | Hydantoinase_B | 1 | 226 | 5.60E-78 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K01469 | OPLAH, OXP1, oplAH | Metabolic pathways | map01100 |
| Glutathione metabolism | map00480 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0003824 | Molecular Function | catalytic activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 2.630 |
| SRR2545915 | Juvenile tuber | 1.090 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 9.250 |
| SRR5643514 | five period of Gastrodia elata | 8.920 | |
| SRR5643515 | five period of Gastrodia elata | 7.910 | |
| SRR5643524 | five period of Gastrodia elata | 7.330 | |
| SRR5643525 | five period of Gastrodia elata | 8.740 | |
| SRR5643528 | five period of Gastrodia elata | 7.080 | |
| SRR5643658 | five period of Gastrodia elata | 8.590 | |
| SRR5643659 | five period of Gastrodia elata | 7.750 | |
| SRR5643660 | five period of Gastrodia elata | 5.270 | |
| SRR5643661 | five period of Gastrodia elata | 5.340 | |
| SRR5643662 | five period of Gastrodia elata | 2.450 | |
| SRR5643663 | five period of Gastrodia elata | 3.610 | |
| SRR5643664 | five period of Gastrodia elata | 3.760 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 6.180 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 0.990 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 5.270 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 3.910 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 1.920 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 3.060 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 3.480 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 3.680 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 4.760 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 2.400 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 5.160 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 5.160 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 2.03 |
| Juven | Juvenile tuber | 8.19 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 3.61 | |
| Mother_Juven | Mother tuber of Juvenile | 7.26 |