Gene detail

Detail information of GWHGAAEX014112/evm.TU.scaffold_56.90

Functional Annotation

Database	Orthologs	Annotation
COG	gi\|451946527\|ref\|YP_007467122.1\|	N-methylhydantoinase B/acetone carboxylase, alpha subunit [Desulfocapsa sulfexigens DSM 10523]
KOG	KOG1939	Oxoprolinase
nr	gi\|743838687\|ref\|XP_010936779.1\|	PREDICTED: 5-oxoprolinase [Elaeis guineensis]
Swissprot	tr\|Q9FIZ7\|OPLA_ARATH	5-oxoprolinase
trEMBL	tr\|C5WUM9\|C5WUM9_SORBI	Putative uncharacterized protein Sb01g031300 {ECO:0000313\|EMBL:EER92049.1}
TAIR	AT5G37830	oxoprolinase 1

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000066	3481709	3483499	-

Transcript Sequence
>GWHTAAEX014112 ATGGCAAGCATGCAGGGGGAGAAATTCAGGTTTTGTATCGATAGAGGTGGAACTTTCACAGACATTTATGCAGGAGTGCCCTGTAGATATGAATGTTGTGTTATGAAACTTCTTTCAGTGGATCCAGCAAACTATGATGATGCTCCTATTGAAGGAATTAGGAGAATCCTTGAAAAGTACACTGGTAATAAAATTCCCCGCTCTTCCAAGATTCCCACGGACAAGATTGAATGGATTCGTATGGGCACTACCGTTGCTACAAATGCACTTCTCGAACGGAAAGGTGAAAGGATTGCTCTTTGTGTGACTAAGGGTTTCAAGGACTTGCTCCAAATTGGAAACCAAGCGCGCCCAAATATATTTGACCTTAAAGTTTTGAAACCTTCTAATCTCTATGAAGAGGTAATAGAGGTAGAAGAGAGGATAGAACTTCTTACTGATCTGGAATTGAAATCCTCTCCTTCAGTGGTTGAAGGTGTTTCTGGGGAGCTTGTCAGTGTGTCAAAACCACTAGACATTGAAGCACTTAAACCTTTATTAAAGGGTTTGCTTTCCAAAGGAATCAAGTGTTTGGCCTTTGTTTTGCTTCATTCCTATACTTATCCTCATCATGAAATCATGATTGAGAAGCTTGCTTTGAATATGGGGTTTAAGCATGTTTCTCTATCTTCTTCTTTGACTCCAATGATCCGTGCAGTACCTCGAGGTCTGACAGCTAGTGTCGATGCCTGCTTAACACCAGTTATCAAAGAATACTTAAGTGGTTTCATGTCTAGATTTGAGGGGAGTGCAGAGAAAGTGAATGTGCTATTTATGCAATCAGATGGCGGGCTTGCTCCGGAGGAAAGATTTTCTGGGCACAAAGCAGTTCTTTCAGGTCCTGCAGGAGGAGTTGTTGGATATTCACAAACTCTTTTCGAGATTGAAACATCGAAACCTTTGATTGGATTTGATATGGGTGGTACATCTACGGATGTTAGCCGCTATGATGGTAGCTATGAGCAGGTACTGGAGACTAAAATTGCTGGGGCTATAATTCAAGCCCCTCAATTTGATATAAACACTGTTGCTGCCAGTGGAGGTTCAAAGCTTAAGTTTCAGTTTGGATCTTTCCGTGTAGGTCCTGAATCTGTTGGGGCTCATCCTGGTCCAGTTTGCTATCAAAAGGGTGGGGAATTGGCAATTACTGATGCTAATTTGATTCTGGGAACAATCATTCCAGATTACTTCCCCTCCATCTTTGGCTCGAATGAAAACCAGCCTTTAGATGTTGAAACTACCCGAAAAGCATTTGAAAAGTTGTCTATTGAGATAAATTCTTATAAAAAAGAACAGGACCCGTCTGCTAAGGATATGAAGGTGGAAGAGATTGCTCTTGGTTTTGTCAATGTTGCCAATGAGACTATGTGTCGGCCTATCCGACAGTTGACAGAAATGAAGGGGTATGAGACTAGAAACCATGCCCTTGCTTGCTTTGGAGGTGCAGGTCCTCAGCATGCATGTGCTATAGCTAGATCATTGGGTATGTCTGAAGTATTTATCCACAGATACTGTGGCATATTGAGTGCTTATGGAATGGGCTTGGCTAATGTTGTTGAAGAATCTCAGGAGCCTTATTGTTCAGTTTATGATCTAAATTCATTGGCTGAGGCTGGCCGACGGGAGTTGCATCTTAAAAGCATAATAAAACAAAGACTGAAAGAGCAAGGATTTAATGATGAAAACATTACGACTGAATCATTTCTAAACCTTAGATATGAGGGCACGGCACTGATACTGCCATTATGGTGA

Network for GWHGAAEX014112

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF05378.12	Hydant_A_N	10	215	7.10E-60
PF01968.17	Hydantoinase_A	235	534	1.30E-105

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01469	OPLAH, OXP1, oplAH	Metabolic pathways	map01100
K01469	OPLAH, OXP1, oplAH	Glutathione metabolism	map00480

Gene Ontology

GO term	Ontology	Name
GO:0016787	Molecular Function	hydrolase activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	6.360
SRP064423	SRR2545915	Juvenile tuber	5.310
SRP108465	SRR5643513	five period of Gastrodia elata	3.790
	SRR5643514	five period of Gastrodia elata	4.460
	SRR5643515	five period of Gastrodia elata	3.870
	SRR5643524	five period of Gastrodia elata	4.740
	SRR5643525	five period of Gastrodia elata	4.120
	SRR5643528	five period of Gastrodia elata	2.880
	SRR5643658	five period of Gastrodia elata	3.530
	SRR5643659	five period of Gastrodia elata	5.010
	SRR5643660	five period of Gastrodia elata	5.130
	SRR5643661	five period of Gastrodia elata	5.060
	SRR5643662	five period of Gastrodia elata	3.930
	SRR5643663	five period of Gastrodia elata	3.710
	SRR5643664	five period of Gastrodia elata	2.950
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	8.150
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	5.570
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	7.430
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	8.820
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	6.470
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	8.730
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	6.500
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	8.480
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	5.040
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	5.260
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	6.230
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	6.230
SRP279888	Gastro	Gastrodia elata tuber	4.53
	Juven	Juvenile tuber	6.87
	Mother_Gastro	Mother tuber of Gastrodia elata	3.47
	Mother_Juven	Mother tuber of Juvenile	5.34