Detail information of GWHGAAEX014115/evm.TU.scaffold_56.96


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG34915.00E-32Predicted membrane protein
nrgi|326517519|dbj|BAK03678.1|1.88E-35predicted protein [Hordeum vulgare subsp. vulgare]
trEMBLtr|W5I5E4|W5I5E4_WHEAT2.00E-36Uncharacterized protein {ECO:0000313|EnsemblPlants:Traes_7DS_14906EE5A.1} (Fragment)
TAIRAT1G273505.00E-32Ribosome associated membrane protein RAMP4

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000006636237893624192+
Transcript Sequence

Network for GWHGAAEX014115

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module4

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF06624.11RAMP425825.40E-26
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005783Cellular Componentendoplasmic reticulum

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms198.150
SRR2545915Juvenile tuber207.210
SRP108465SRR5643513five period of Gastrodia elata189.890
SRR5643514five period of Gastrodia elata146.910
SRR5643515five period of Gastrodia elata290.540
SRR5643524five period of Gastrodia elata121.990
SRR5643525five period of Gastrodia elata363.900
SRR5643528five period of Gastrodia elata281.310
SRR5643658five period of Gastrodia elata336.470
SRR5643659five period of Gastrodia elata180.840
SRR5643660five period of Gastrodia elata193.090
SRR5643661five period of Gastrodia elata179.100
SRR5643662five period of Gastrodia elata239.940
SRR5643663five period of Gastrodia elata193.680
SRR5643664five period of Gastrodia elata307.460
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_1405.170
SRR6049655Rhizomagastrodiae_C368-T10_good_1286.170
SRR6049656Rhizomagastrodiae_C368-T07_good_1425.320
SRR6049657Rhizomagastrodiae_C368-T07_good_1452.200
SRR6049658Rhizomagastrodiae_C368-T04_good_1432.900
SRR6049659Rhizomagastrodiae_C368-T04_good_1449.600
SRR6049660Rhizomagastrodiae_C368-T01_good_1524.220
SRR6049661Rhizomagastrodiae_C368-T04_good_1444.830
SRR6049662Rhizomagastrodiae_C368-T01_good_1375.330
SRR6049663Rhizomagastrodiae_C368-T01_good_1605.460
SRR6049664Rhizomagastrodiae_C368-T10_good_1444.280
SRR6049665Rhizomagastrodiae_C368-T10_good_1444.280
SRP279888GastroGastrodia elata tuber 234.11
JuvenJuvenile tuber114.32
Mother_GastroMother tuber of Gastrodia elata 431.66
Mother_JuvenMother tuber of Juvenile 164.72