Detail information of GWHGAAEX014121/evm.TU.scaffold_56.102


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|512550344|ref|YP_008088250.1|1.00E-11RNA-binding proteins (RRM domain) [Chthonomonas calidirosea T49]
KOGKOG01200Splicing factor U2AF, large subunit (RRM superfamily)
nrgi|743861092|ref|XP_010943183.1|0PREDICTED: splicing factor U2af large subunit B-like isoform X3 [Elaeis guineensis]
Swissprottr|Q9ZR40|U2A2B_NICPL0Splicing factor U2af large subunit B
trEMBLtr|F6GWY2|F6GWY2_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CCB44468.1}
TAIRAT4G366900U2 snRNP auxilliary factor, large subunit, splicing factor

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000006637174403742936+
Transcript Sequence

Network for GWHGAAEX014121

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00076.21RRM_13684372.20E-16
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K12837U2AF2 Spliceosome map03040

Gene Ontology

GO term OntologyName
GO:0006397Biological ProcessmRNA processing
GO:0003676Molecular Functionnucleic acid binding
GO:0003723Molecular FunctionRNA binding
GO:0005634Cellular Componentnucleus

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms182.430
SRR2545915Juvenile tuber175.320
SRP108465SRR5643513five period of Gastrodia elata135.590
SRR5643514five period of Gastrodia elata159.530
SRR5643515five period of Gastrodia elata144.620
SRR5643524five period of Gastrodia elata137.270
SRR5643525five period of Gastrodia elata249.160
SRR5643528five period of Gastrodia elata179.620
SRR5643658five period of Gastrodia elata249.950
SRR5643659five period of Gastrodia elata182.470
SRR5643660five period of Gastrodia elata217.030
SRR5643661five period of Gastrodia elata161.760
SRR5643662five period of Gastrodia elata173.490
SRR5643663five period of Gastrodia elata233.900
SRR5643664five period of Gastrodia elata205.640
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_1238.220
SRR6049655Rhizomagastrodiae_C368-T10_good_1186.510
SRR6049656Rhizomagastrodiae_C368-T07_good_1208.570
SRR6049657Rhizomagastrodiae_C368-T07_good_1276.830
SRR6049658Rhizomagastrodiae_C368-T04_good_1258.360
SRR6049659Rhizomagastrodiae_C368-T04_good_1278.590
SRR6049660Rhizomagastrodiae_C368-T01_good_1242.240
SRR6049661Rhizomagastrodiae_C368-T04_good_1244.730
SRR6049662Rhizomagastrodiae_C368-T01_good_1177.840
SRR6049663Rhizomagastrodiae_C368-T01_good_1201.120
SRR6049664Rhizomagastrodiae_C368-T10_good_1144.050
SRR6049665Rhizomagastrodiae_C368-T10_good_1144.050
SRP279888GastroGastrodia elata tuber 309.37
JuvenJuvenile tuber265.57
Mother_GastroMother tuber of Gastrodia elata 258.98
Mother_JuvenMother tuber of Juvenile 251.86