Detail information of GWHGAAEX014126/evm.TU.scaffold_56.110


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG16572.00E-37CCAAT-binding factor, subunit C (HAP5)
nrgi|702278057|ref|XP_010044803.1|2.24E-41PREDICTED: nuclear transcription factor Y subunit gamma [Eucalyptus grandis]
Swissprottr|Q9FGP6|NFYC5_ARATH5.00E-09Nuclear transcription factor Y subunit C-5
trEMBLtr|F6HGA3|F6HGA3_VITVI5.00E-39Putative uncharacterized protein {ECO:0000313|EMBL:CCB51296.1}
TAIRAT5G432502.00E-37nuclear factor Y, subunit C13

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000006639298673938640+
Transcript Sequence

Network for GWHGAAEX014126

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00808.22CBFD_NFYB_HMF33967.40E-18
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyNF-YC

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0046982Molecular Functionprotein heterodimerization activity

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms13.880
SRR2545915Juvenile tuber9.660
SRP108465SRR5643513five period of Gastrodia elata23.760
SRR5643514five period of Gastrodia elata24.340
SRR5643515five period of Gastrodia elata17.820
SRR5643524five period of Gastrodia elata26.560
SRR5643525five period of Gastrodia elata33.600
SRR5643528five period of Gastrodia elata35.640
SRR5643658five period of Gastrodia elata24.980
SRR5643659five period of Gastrodia elata32.520
SRR5643660five period of Gastrodia elata36.150
SRR5643661five period of Gastrodia elata32.770
SRR5643662five period of Gastrodia elata23.490
SRR5643663five period of Gastrodia elata27.600
SRR5643664five period of Gastrodia elata23.120
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_129.080
SRR6049655Rhizomagastrodiae_C368-T10_good_156.850
SRR6049656Rhizomagastrodiae_C368-T07_good_132.200
SRR6049657Rhizomagastrodiae_C368-T07_good_123.810
SRR6049658Rhizomagastrodiae_C368-T04_good_125.660
SRR6049659Rhizomagastrodiae_C368-T04_good_120.540
SRR6049660Rhizomagastrodiae_C368-T01_good_118.180
SRR6049661Rhizomagastrodiae_C368-T04_good_118.650
SRR6049662Rhizomagastrodiae_C368-T01_good_126.340
SRR6049663Rhizomagastrodiae_C368-T01_good_121.760
SRR6049664Rhizomagastrodiae_C368-T10_good_153.910
SRR6049665Rhizomagastrodiae_C368-T10_good_153.910
SRP279888GastroGastrodia elata tuber 43.71
JuvenJuvenile tuber44.55
Mother_GastroMother tuber of Gastrodia elata 24.21
Mother_JuvenMother tuber of Juvenile 27.08