Detail information of GWHGAAEX014127/evm.TU.scaffold_56.111


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|217077443|ref|YP_002335161.1|5.00E-22integral membrane protein, Rhomboid family [Thermosipho africanus TCF52B]
KOGKOG22891.00E-141Rhomboid family proteins
nrgi|672143063|ref|XP_008795400.1|0PREDICTED: inactive rhomboid protein 1-like [Phoenix dactylifera]
trEMBLtr|M0RU99|M0RU99_MUSAM1.00E-176Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr11P21690_001}
TAIRAT1G631201.00E-141RHOMBOID-like 2

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000006640868934101474-
Transcript Sequence

Network for GWHGAAEX014127

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module4

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01694.21Rhomboid1182605.60E-41
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0004252Molecular Functionserine-type endopeptidase activity
GO:0016021Cellular Componentintegral component of membrane

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms18.150
SRR2545915Juvenile tuber18.830
SRP108465SRR5643513five period of Gastrodia elata26.890
SRR5643514five period of Gastrodia elata26.400
SRR5643515five period of Gastrodia elata28.880
SRR5643524five period of Gastrodia elata24.990
SRR5643525five period of Gastrodia elata40.190
SRR5643528five period of Gastrodia elata39.170
SRR5643658five period of Gastrodia elata64.010
SRR5643659five period of Gastrodia elata20.260
SRR5643660five period of Gastrodia elata19.390
SRR5643661five period of Gastrodia elata22.360
SRR5643662five period of Gastrodia elata20.660
SRR5643663five period of Gastrodia elata20.660
SRR5643664five period of Gastrodia elata21.950
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_122.150
SRR6049655Rhizomagastrodiae_C368-T10_good_123.320
SRR6049656Rhizomagastrodiae_C368-T07_good_122.800
SRR6049657Rhizomagastrodiae_C368-T07_good_120.030
SRR6049658Rhizomagastrodiae_C368-T04_good_119.460
SRR6049659Rhizomagastrodiae_C368-T04_good_125.570
SRR6049660Rhizomagastrodiae_C368-T01_good_120.390
SRR6049661Rhizomagastrodiae_C368-T04_good_121.100
SRR6049662Rhizomagastrodiae_C368-T01_good_124.320
SRR6049663Rhizomagastrodiae_C368-T01_good_122.620
SRR6049664Rhizomagastrodiae_C368-T10_good_131.320
SRR6049665Rhizomagastrodiae_C368-T10_good_131.320
SRP279888GastroGastrodia elata tuber 19.09
JuvenJuvenile tuber22.06
Mother_GastroMother tuber of Gastrodia elata 54.77
Mother_JuvenMother tuber of Juvenile 78.03