Detail information of GWHGAAEX014132/evm.TU.scaffold_57.2
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 5.00E-124 | FOG: PPR repeat |
| nr | gi|672184166|ref|XP_008812386.1| | 0 | PREDICTED: putative pentatricopeptide repeat-containing protein At4g17915 [Phoenix dactylifera] |
| Swissprot | tr|P0C043|PP318_ARATH | 3.00E-138 | Putative pentatricopeptide repeat-containing protein At4g17915 |
| trEMBL | tr|K3ZM37|K3ZM37_SETIT | 2.00E-168 | Uncharacterized protein {ECO:0000313|EnsemblPlants:Si027650m} |
| TAIR | AT4G17910_1 | 5.00E-124 | Unannotated protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000055 | 130920 | 139309 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX014132
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module6 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01535.19 | PPR | 11 | 38 | 0.29 |
| PF13041.5 | PPR_2 | 40 | 86 | 3.20E-13 |
| PF13041.5 | PPR_2 | 113 | 157 | 2.50E-14 |
| PF13041.5 | PPR_2 | 180 | 228 | 2.50E-12 |
| PF01535.19 | PPR | 254 | 283 | 0.53 |
| PF13041.5 | PPR_2 | 287 | 334 | 1.90E-14 |
| PF13041.5 | PPR_2 | 357 | 400 | 1.20E-13 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 4.900 |
| SRR2545915 | Juvenile tuber | 1.530 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 3.790 |
| SRR5643514 | five period of Gastrodia elata | 3.170 | |
| SRR5643515 | five period of Gastrodia elata | 3.440 | |
| SRR5643524 | five period of Gastrodia elata | 3.680 | |
| SRR5643525 | five period of Gastrodia elata | 4.610 | |
| SRR5643528 | five period of Gastrodia elata | 4.930 | |
| SRR5643658 | five period of Gastrodia elata | 3.380 | |
| SRR5643659 | five period of Gastrodia elata | 3.020 | |
| SRR5643660 | five period of Gastrodia elata | 2.690 | |
| SRR5643661 | five period of Gastrodia elata | 3.410 | |
| SRR5643662 | five period of Gastrodia elata | 2.690 | |
| SRR5643663 | five period of Gastrodia elata | 2.680 | |
| SRR5643664 | five period of Gastrodia elata | 2.860 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 6.690 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 7.020 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 8.960 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 7.800 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 9.940 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 11.900 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 8.650 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 9.320 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 6.580 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 9.720 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 4.760 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 4.760 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 3.85 |
| Juven | Juvenile tuber | 2.66 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 5.70 | |
| Mother_Juven | Mother tuber of Juvenile | 3.97 |