Gene detail

Detail information of GWHGAAEX014147/evm.TU.scaffold_57.27

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG1258	6.00E-155	mRNA processing protein
nr	gi\|743794938\|ref\|XP_010924312.1\|	0	PREDICTED: uncharacterized protein LOC105047193 isoform X1 [Elaeis guineensis]
trEMBL	tr\|K3YG19\|K3YG19_SETIT	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Si013187m}
TAIR	AT5G46400	6.00E-155	Tetratricopeptide repeat (TPR)-like superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000055	1211114	1293783	-

Transcript Sequence
>GWHTAAEX014147 GTCGAGGATTTTCATCTAATTTCTAATTATACAAATGTACAACAGTTCGAAATTTAATCTAACTCGCATCACTCCTCGGGTTAAAACACGGCGAACAAATTTTAAGACTGCGCGAGCCTGCGCCCAGCGGCTGTTTTGAGCGTGGAAGAAAAGGTAGAGGTGTATCCAATGAGGAAAGATGGAGCACTTGAAGACACGTGCATGGATCACGTTGACTCCGTTGAAAATAGGGTTCAAGCATTGTTACAAAGTAATGAAGCTAGCTTCAATGACTGGCTGTTGCTCATAGCAGAAATTGAGGATTCATCACCTGATGACTTGCAAAAGATCTGCATTGTGTATGATTCCTTTTTGTCCGAATATCCTTTATGCTATGGGTACTGGACAAGATTTGCAGGGCATAAGGCACGGCTCTGCACTATGAATGACGTGGAGGATGTCTATGAACGGGCAGTGAAGATAGCTTCACACTCTGTTCACCTCTGGGTTAGCTATTGTAAGTTTGCTACATTATCTTTTGAAGATCCTGCAGATGTTAGAAGGCTGTTTGAGAGAGGTTTATCTTATGTTCATAAGGACTACTTGTGCCATCTCTTATGGGATATTTATATTGAATATGAATATTGTCAAAAGCAGTGGAAACGATTAGCTCATATTTATATTAACACTTTAAGGTTTCCTACAAGAAGGCTGCGAAACTATTATGAAAGCTTTAAGAAGTTGGTTGCTCTGTTGGAAGAACAGATGGGATACCAAAATGCAGCAGCCGCATGTCCTGAAGCTGTTCTTAATTGCGAAATGACACTCATGAAAGACTGCGTGTATTCAGACTTTTCAAATGCTGTGGATTTTCTTGGTGAAATTCTTGCAGGTCCAGAAGCTTTGAAGAAGTATTTAGCCATTGGAGAGCTATTATACCACAATTCAATGCAATTAGATAAAAGCATAAGCTGTTTTGAGACTCATATTCATAGACCTTTTTTTCATATCATGCCACTTGATGATTTTCAACTTCAGAATTGGCATAAATATCTCACTTTCGTTGAGGAGCAAGGAAATTTTAATTGGACTGTTAAACTTTACGAGAGATGTTTAATTCCTTGTGCTAATTACTCAGAGTTCTGGATTCGTTATGTGGATTTTGCGGATGATAAGGGTGGTAGAGAGATTGCTAACGATGCATTGGAAAGAGCATTGAGGATTTTCTTAAAGAGAATTCCAGCTTTCCATCCATACTATTTATTGTTTAAAGAAAAAATTGGGGATGCAGTTAATGCCCGTGCTCTTCTACAAAGCAGCGATGATTGTGCAATTGATGTTGTTGAAAATGTCAGCAGAAACGCTAACATGGAAAAGCGTTTGGGAAATATTGAAGCTGCTCAGGAGATATATGATAAAGCAATCAAATTGGCTTATGAGAAGCAGAGCTTGAAGTCACTTACTCTTCTATATATCAATTTTGCACGGTTTACATTTGTGGTTACTGGCAGGGTAGATGCTGCCAATGAAGTTTTCATCAAAGGTATCCAAAAACTCCCGTGCAAATTAATTATAGAGGAATTTCTGAACTTCGTAACTATGCATGGTGGGGCGAACCATTTGCTTACAGTGGATTGTATGATTGCTGATTTGATTTCTTCAGAATCGAATGTTTTTCTAGCTTTAAGCCCTCATGACCGTGAAGGAATTTCACAGATATATCTGAAGTTTGTGGACCTCCATGGAACTATTTTTGAATCAAGACAAGCATGGGATCGACACAGAAAGCTATTCCCGCATATTTTGAGACCACTTTCTGTTTGTGATTATTCTTCTAAAGGGTTCAAATTTCAGAGCAAAAAATCCGTTGAGTCGAAAGTCATGCAAACTAAATCACATAATCATTCAAATGAAAATCCCAACAAAAATATTTTGGATAAAAATCTCGTTGAAAATCATTCTTCAATTAATACGCTTATCACTCTGCCTGAAGCTGCTTTGAACTGTGAGCTAGAATCTAATGTTAAAGCTGATAATGTGAAGAAAAGCCAGGAATCTTTAGAAGCTGAAACAACTAATGTTCATGAACTGTCAATTCCCACGGAGTCTGAGATGAATACCATGAACAAGCCTGCTATTGAGTCTCGAAATGAAAGTAAAATGTTAAATGCTATATCAGAATACCATGATGGTGAAATGCCTGTTAAAGGATGTATAAAAAAAATAAATAATGAAAATTTGGAGCTCCCTACCCTTGATAACCTCACAATATGCTCTAAAGATTATGAAACTATGCAAACCAGAACAATTAGCTCCGATGACAATAATACTCCTCAGGAAACTGCTTCTAAGGAAGATGGAAGCAAATCTGCTGTTAACGGTAGCGATTGTGAGGGCTTAGTAATGCATTTGTCTGGTGAGAAAAACTTGAAATTTGACTTCGAATCTGAAGAAAAACGTGAAGATGGTGATTTTCCCTCAATCTCAGCTAATCTTTCTCCTGAAATCATGAACTCTGACTTTGAATCACCGAGGTCAGGAATTAAAGAAGAAGCGCAGCTAAAATTTCAGGAAAAGATGAATTCAAATCTGGCTTTGCCTGCTAATTCTGAACACCCTCCGACTTCGGCTGATGGGGGGCAGTGGGCTCATATTTCTTTTGGTGCACAATGTATTCCCGTTCCAAACTCAGTGCTTCAGGGATACATTCAGTCTTTCCAATCTCAACAATGGCAGGCGCTTGGTCAATTGCAAAACCAATCAGGCATGACTAACCAACAGATGCCTTTAATACAGAGCTTTACTTCTCAGACTGCGTCTGTTCCTAACTCACAGGATCCACAGGCTAGCTATACCCAATTTCAGTATCAGCTTGCTGCTTCTCAAGCTTACACAAATCCAGATCCTGCTTTTCTTGAGCATTGTATGCAGCAATCGGCTGTTATTTACACACCAGATCAGCAAGTTCAACATCCTCCTTATCAAACTCAGATTCAATTATATCAAAATGCTTCACAAAGTGATGATTGGTATAGTTATTATCAAAGTGCTCAAGGATTTCCACCGCACATTTGGCAATACTATCAGAATTTATATTATCTTCAGCAGCAACAGCTACAACAAAGACAGCAAGATCAGCAACTGAACAATTCTAACAAGAATCAGTTAATTGATCTCTCTGAGGCAAGGAACATTGAACAAGAGTTGCATGAGAACCAAGTAGGTCAGGTTCAGCTACAAGTGCAGATAGATACTCTACAACATCATAGAAATCTAGATGAAAAATTGAATGTCACAGGGCTGCAACAAAATCAACAAGATAAGCAGTATGAGTCAGCCCAATCAATCCAGCAGAGTGTGCAGACGATGAATTCAGAGCAATCCCAATGCTTATATCTTCAACAGCAACAAAATTATTACATGCAGCAGCAACAATACCAATTGTATCTGCAGCAGCAACAACAGCAACCGCAGCAACAACAACAGCAGCAACAACAGCAACCGCAGCAACAACAACAACAGCAACAGCACCAACAGTTCTTACACTTCCACCAACAACAACTCCTCTATCAACAAAAGCAACTTCAACAACAGAGGCCAATTCTGCCACTGCAACAGCACCAACCGTTGTACTTGCAACAGCAAGACTATCAGCAGCACCAGGCGCCTATGCAACAGCAAGACTATCAGCAGCAGCAGCAACCAAATGCATTGGAACTCAAGCCTGTAGCGGCTTATTCTCAGGGTAAAGGAGATCCACTTCCAAGTGCTGAACACTTGGCAATTTCTCCTACTAAACAGTCCGATAATTCACCAAACCACTAACTTATATGTATAAAAGGTATGAATCATTTTTTTTATATTTTTTTGCAGCAATTCATTTGTGTTTGCTTTCAGTTAAACTGCCAACTGAACCTTCTACATGAAAAGTTGGACTGTTAAATGCACTCTTTATTATATATGTATGGATTCTGTAAAGAGTAAACTATGTTATAATTCAGTTAATTCTGCATGTGTAGTGCTGTATTTGTTGATTACAAAAAATGCAGTAGCTTTTATGCTTGTACCTTATTGTAAACATAAATGGAATTGCCTCTGTTTATTTGGCTG

Network for GWHGAAEX014147

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module8

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

>GWHPAAEX014147
MRKDGALEDTCMDHVDSVENRVQALLQSNEASFNDWLLLIAEIEDSSPDDLQKICIVYDSFLSEYPLCYGYWTRFAGHKARLCTMNDVEDVYERAVKIASHSVHLWVSYCKFATLSFEDPADVRRLFERGLSYVHKDYLCHLLWDIYIEYEYCQKQWKRLAHIYINTLRFPTRRLRNYYESFKKLVALLEEQMGYQNAAAACPEAVLNCEMTLMKDCVYSDFSNAVDFLGEILAGPEALKKYLAIGELLYHNSMQLDKSISCFETHIHRPFFHIMPLDDFQLQNWHKYLTFVEEQGNFNWTVKLYERCLIPCANYSEFWIRYVDFADDKGGREIANDALERALRIFLKRIPAFHPYYLLFKEKIGDAVNARALLQSSDDCAIDVVENVSRNANMEKRLGNIEAAQEIYDKAIKLAYEKQSLKSLTLLYINFARFTFVVTGRVDAANEVFIKGIQKLPCKLIIEEFLNFVTMHGGANHLLTVDCMIADLISSESNVFLALSPHDREGISQIYLKFVDLHGTIFESRQAWDRHRKLFPHILRPLSVCDYSSKGFKFQSKKSVESKVMQTKSHNHSNENPNKNILDKNLVENHSSINTLITLPEAALNCELESNVKADNVKKSQESLEAETTNVHELSIPTESEMNTMNKPAIESRNESKMLNAISEYHDGEMPVKGCIKKINNENLELPTLDNLTICSKDYETMQTRTISSDDNNTPQETASKEDGSKSAVNGSDCEGLVMHLSGEKNLKFDFESEEKREDGDFPSISANLSPEIMNSDFESPRSGIKEEAQLKFQEKMNSNLALPANSEHPPTSADGGQWAHISFGAQCIPVPNSVLQGYIQSFQSQQWQALGQLQNQSGMTNQQMPLIQSFTSQTASVPNSQDPQASYTQFQYQLAASQAYTNPDPAFLEHCMQQSAVIYTPDQQVQHPPYQTQIQLYQNASQSDDWYSYYQSAQGFPPHIWQYYQNLYYLQQQQLQQRQQDQQLNNSNKNQLIDLSEARNIEQELHENQVGQVQLQVQIDTLQHHRNLDEKLNVTGLQQNQQDKQYESAQSIQQSVQTMNSEQSQCLYLQQQQNYYMQQQQYQLYLQQQQQQPQQQQQQQQQQPQQQQQQQQHQQFLHFHQQQLLYQQKQLQQQRPILPLQQHQPLYLQQQDYQQHQAPMQQQDYQQQQQPNALELKPVAAYSQGKGDPLPSAEHLAISPTKQSDNSPNH

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006396	Biological Process	RNA processing
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	34.290
SRP064423	SRR2545915	Juvenile tuber	32.260
SRP108465	SRR5643513	five period of Gastrodia elata	7.440
	SRR5643514	five period of Gastrodia elata	6.990
	SRR5643515	five period of Gastrodia elata	7.310
	SRR5643524	five period of Gastrodia elata	6.760
	SRR5643525	five period of Gastrodia elata	10.110
	SRR5643528	five period of Gastrodia elata	7.970
	SRR5643658	five period of Gastrodia elata	10.210
	SRR5643659	five period of Gastrodia elata	8.850
	SRR5643660	five period of Gastrodia elata	9.260
	SRR5643661	five period of Gastrodia elata	6.140
	SRR5643662	five period of Gastrodia elata	7.400
	SRR5643663	five period of Gastrodia elata	9.390
	SRR5643664	five period of Gastrodia elata	9.240
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	10.980
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	7.980
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	9.250
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	14.850
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	14.180
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	15.130
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	11.740
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	12.070
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	7.570
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	8.950
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	8.150
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	8.150
SRP279888	Gastro	Gastrodia elata tuber	12.73
	Juven	Juvenile tuber	12.02
	Mother_Gastro	Mother tuber of Gastrodia elata	8.28
	Mother_Juven	Mother tuber of Juvenile	10.98