Detail information of GWHGAAEX014148/evm.TU.scaffold_57.28


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG39498.00E-120RNA polymerase II elongator complex, subunit ELP4
nrgi|743758379|ref|XP_010926460.1|1.68E-166PREDICTED: elongator complex protein 4 isoform X1 [Elaeis guineensis]
Swissprottr|Q9C778|ELP4_ARATH2.00E-120Elongator complex protein 4
trEMBLtr|K4ABE7|K4ABE7_SETIT7.00E-163Uncharacterized protein {ECO:0000313|EnsemblPlants:Si036204m}
TAIRAT3G112208.00E-120Paxneb protein-related

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000005512964511308275-
Transcript Sequence

Network for GWHGAAEX014148

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module4

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF05625.10PAXNEB273717.10E-71
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0002098Biological ProcesstRNA wobble uridine modification
GO:0033588Cellular ComponentElongator holoenzyme complex

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms21.490
SRR2545915Juvenile tuber23.170
SRP108465SRR5643513five period of Gastrodia elata15.090
SRR5643514five period of Gastrodia elata15.230
SRR5643515five period of Gastrodia elata14.750
SRR5643524five period of Gastrodia elata18.630
SRR5643525five period of Gastrodia elata19.010
SRR5643528five period of Gastrodia elata23.540
SRR5643658five period of Gastrodia elata17.880
SRR5643659five period of Gastrodia elata16.800
SRR5643660five period of Gastrodia elata25.270
SRR5643661five period of Gastrodia elata22.030
SRR5643662five period of Gastrodia elata17.970
SRR5643663five period of Gastrodia elata18.570
SRR5643664five period of Gastrodia elata19.760
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_113.730
SRR6049655Rhizomagastrodiae_C368-T10_good_119.010
SRR6049656Rhizomagastrodiae_C368-T07_good_115.080
SRR6049657Rhizomagastrodiae_C368-T07_good_114.610
SRR6049658Rhizomagastrodiae_C368-T04_good_118.930
SRR6049659Rhizomagastrodiae_C368-T04_good_118.060
SRR6049660Rhizomagastrodiae_C368-T01_good_116.650
SRR6049661Rhizomagastrodiae_C368-T04_good_117.870
SRR6049662Rhizomagastrodiae_C368-T01_good_116.530
SRR6049663Rhizomagastrodiae_C368-T01_good_117.450
SRR6049664Rhizomagastrodiae_C368-T10_good_114.280
SRR6049665Rhizomagastrodiae_C368-T10_good_114.280
SRP279888GastroGastrodia elata tuber 26.03
JuvenJuvenile tuber34.13
Mother_GastroMother tuber of Gastrodia elata 45.87
Mother_JuvenMother tuber of Juvenile 51.73