Detail information of GWHGAAEX014152/evm.TU.scaffold_57.34
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|46447230|ref|YP_008595.1| | 2.00E-163 | glycogen synthase [Candidatus Protochlamydia amoebophila UWE25] |
| nr | gi|672153135|ref|XP_008797549.1| | 0 | PREDICTED: probable starch synthase 4, chloroplastic/amyloplastic [Phoenix dactylifera] |
| Swissprot | tr|Q0WVX5|SSY4_ARATH | 0 | Probable starch synthase 4, chloroplastic/amyloplastic (Precursor) |
| trEMBL | tr|A0A067KNY8|A0A067KNY8_JATCU | 0 | Uncharacterized protein {ECO:0000313|EMBL:KDP37946.1} |
| TAIR | AT4G18240_2 | 0 | Unannotated protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000055 | 1541675 | 1635250 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX014152
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF08323.10 | Glyco_transf_5 | 446 | 685 | 1.90E-65 |
| PF13692.5 | Glyco_trans_1_4 | 745 | 893 | 2.70E-07 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GT5 |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K00703 | glgA | Metabolic pathways | map01100 |
| Biosynthesis of secondary metabolites | map01110 | ||
| Starch and sucrose metabolism | map00500 | ||
| Biofilm formation - Escherichia coli | map02026 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0004373 | Molecular Function | glycogen (starch) synthase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 42.380 |
| SRR2545915 | Juvenile tuber | 50.820 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 25.920 |
| SRR5643514 | five period of Gastrodia elata | 23.810 | |
| SRR5643515 | five period of Gastrodia elata | 28.090 | |
| SRR5643524 | five period of Gastrodia elata | 25.370 | |
| SRR5643525 | five period of Gastrodia elata | 17.540 | |
| SRR5643528 | five period of Gastrodia elata | 16.140 | |
| SRR5643658 | five period of Gastrodia elata | 17.790 | |
| SRR5643659 | five period of Gastrodia elata | 20.990 | |
| SRR5643660 | five period of Gastrodia elata | 18.840 | |
| SRR5643661 | five period of Gastrodia elata | 17.870 | |
| SRR5643662 | five period of Gastrodia elata | 28.210 | |
| SRR5643663 | five period of Gastrodia elata | 30.600 | |
| SRR5643664 | five period of Gastrodia elata | 22.730 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 31.470 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 25.910 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 27.980 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 35.110 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 35.050 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 36.940 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 29.540 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 32.190 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 22.720 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 22.260 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 23.940 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 23.940 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 26.16 |
| Juven | Juvenile tuber | 23.04 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 26.24 | |
| Mother_Juven | Mother tuber of Juvenile | 22.24 |