Detail information of GWHGAAEX014163/evm.TU.scaffold_57.50
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|311106146|ref|YP_003978999.1| | 2.00E-50 | carbonic anhydrase [Achromobacter xylosoxidans A8] |
| KOG | KOG1578 | 6.00E-94 | Predicted carbonic anhydrase involved in protection against oxidative damage |
| nr | gi|672118494|ref|XP_008782456.1| | 5.97E-113 | PREDICTED: carbonic anhydrase, chloroplastic isoform X1 [Phoenix dactylifera] |
| Swissprot | tr|P27141|CAHC_TOBAC | 2.00E-98 | Carbonic anhydrase, chloroplastic (Precursor) |
| trEMBL | tr|M0TY64|M0TY64_MUSAM | 3.00E-108 | Carbonic anhydrase {ECO:0000256|RuleBase:RU003956} |
| TAIR | AT3G01500 | 6.00E-94 | carbonic anhydrase 1 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000055 | 2251595 | 2254906 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX014163
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module1 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00484.18 | Pro_CA | 76 | 233 | 1.70E-44 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K01673 | cynT, can | Metabolic pathways | map01100 |
| Nitrogen metabolism | map00910 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0015976 | Biological Process | carbon utilization |
| GO:0004089 | Molecular Function | carbonate dehydratase activity |
| GO:0008270 | Molecular Function | zinc ion binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 32.160 |
| SRR2545915 | Juvenile tuber | 54.050 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 33.970 |
| SRR5643514 | five period of Gastrodia elata | 83.710 | |
| SRR5643515 | five period of Gastrodia elata | 81.990 | |
| SRR5643524 | five period of Gastrodia elata | 58.910 | |
| SRR5643525 | five period of Gastrodia elata | 526.210 | |
| SRR5643528 | five period of Gastrodia elata | 536.890 | |
| SRR5643658 | five period of Gastrodia elata | 530.770 | |
| SRR5643659 | five period of Gastrodia elata | 81.090 | |
| SRR5643660 | five period of Gastrodia elata | 114.480 | |
| SRR5643661 | five period of Gastrodia elata | 86.350 | |
| SRR5643662 | five period of Gastrodia elata | 95.970 | |
| SRR5643663 | five period of Gastrodia elata | 37.990 | |
| SRR5643664 | five period of Gastrodia elata | 49.150 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 66.270 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 79.060 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 73.000 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 46.450 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 84.210 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 103.960 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 63.690 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 62.570 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 59.560 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 118.100 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 106.830 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 106.830 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 88.55 |
| Juven | Juvenile tuber | 60.38 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 211.02 | |
| Mother_Juven | Mother tuber of Juvenile | 279.78 |