Detail information of GWHGAAEX014170/evm.TU.scaffold_57.62
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| nr | gi|697121177|ref|XP_009614561.1| | 2.32E-109 | PREDICTED: AP2/ERF and B3 domain-containing transcription factor RAV1-like [Nicotiana tomentosiformis] |
| Swissprot | tr|Q9LS06|RAVL4_ARATH | 6.00E-103 | AP2/ERF and B3 domain-containing transcription factor ARF14 |
| trEMBL | tr|W8CWZ4|W8CWZ4_OLEEU | 6.00E-108 | Tempranillo {ECO:0000313|EMBL:AGS83386.1} |
| TAIR | AT3G25730 | 2.00E-102 | ethylene response DNA binding factor 3 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000055 | 2568170 | 2569160 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX014170
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module6 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00847.19 | AP2 | 57 | 104 | 2.20E-06 |
| PF02362.20 | B3 | 173 | 271 | 2.30E-25 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | AP2/ERF-RAV |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0003677 | Molecular Function | DNA binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 41.150 |
| SRR2545915 | Juvenile tuber | 21.510 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 215.740 |
| SRR5643514 | five period of Gastrodia elata | 97.780 | |
| SRR5643515 | five period of Gastrodia elata | 128.420 | |
| SRR5643524 | five period of Gastrodia elata | 129.870 | |
| SRR5643525 | five period of Gastrodia elata | 55.550 | |
| SRR5643528 | five period of Gastrodia elata | 87.250 | |
| SRR5643658 | five period of Gastrodia elata | 57.810 | |
| SRR5643659 | five period of Gastrodia elata | 58.090 | |
| SRR5643660 | five period of Gastrodia elata | 41.610 | |
| SRR5643661 | five period of Gastrodia elata | 41.890 | |
| SRR5643662 | five period of Gastrodia elata | 42.710 | |
| SRR5643663 | five period of Gastrodia elata | 29.600 | |
| SRR5643664 | five period of Gastrodia elata | 46.100 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 199.840 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 149.740 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 118.170 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 339.100 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 274.600 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 298.590 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 200.850 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 274.100 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 85.370 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 90.930 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 107.940 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 107.940 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 26.43 |
| Juven | Juvenile tuber | 54.84 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 152.70 | |
| Mother_Juven | Mother tuber of Juvenile | 57.19 |