Gene detail

Detail information of GWHGAAEX014171/evm.TU.scaffold_57.66

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG0779	4.00E-80	Protease, Ulp1 family
nr	gi\|695023530\|ref\|XP_009398939.1\|	6.55E-119	PREDICTED: ubiquitin-like-specific protease 1D [Musa acuminata subsp. malaccensis]
Swissprot	tr\|Q2PS26\|ULP1D_ARATH	1.00E-81	Ubiquitin-like-specific protease 1D
trEMBL	tr\|M0T3S1\|M0T3S1_MUSAM	1.00E-111	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr6P03230_001}
TAIR	AT1G60220	4.00E-80	UB-like protease 1D

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000055	2886303	2945805	+

Transcript Sequence
>GWHTAAEX014171 ATGAACGAATCATTCAGTTTTCGTTCGAACTTCATCGGAGAAGACGTTGGATCCAGGAATGTTTACTGGACGCCGGAAAAGCCGCTCGATTCGTTCGAACTTCATTCAAAATGCCTCTCCTCGCCCGGCTGCTCTGCTCTTGCGTATGTATTGGTTGAAATTTTGAAAATTAAATTGATTGTATGTATGGATAAGGTCGTGATTGCTAGGCCTCCGAGAGGTGGGATGGGAAGAGGGTTTTTCAAGAGAAAAATCGAAACCACATTCACGACCGGAGGCCTCGATGGGACTATGGTCAGTCCGGCAACTCTTTCTCGTGTCGCGTGGATTATGAGGCCTTCCAAAAAGCAGGAGCTTCTCTCTTTCATGGGTGAGTCCCAGACATCGCAGGCGGAGTTTTCCGGCGCTGGCGCAACCGGAGGCAACAACCTGCCTCAGGTCGGCTTGGCAAAGGCATCCTATCCCGCACGTAAAGAAAAGTTTGATCGAATGCTAAATGGTGCTTTGTGCTTTCAGCCCGATATGGGCAATCAGTTCGTTTCTGGTCTCCAGCTATATCAGAATGAGTTCTGTTTGAGTAGCATCAGTTCGAACCCTAACTTTGCTGGAGAATGCAAGATTTATAGAGAAGTTATCAGCACAGAATCAGGGACAAATGCCAACAAGGTTGATTCTGCATTTAGGGGGGATTTAAGCCTTGTAGGAAGTGACAAGGACAAGGGAGTACAGAAGATTGAATTGCAAATGCATAAAAAAGTTCATCGACTTCACACGCGCTCACAGGCTGATGAATTTTCATCTGTAAATAATAAGTTCTCTCGATGCTTTGCTGAATTCAGTGAACAGACACCTCCCTCTACTAGTTGCAGGGGAGCACAATCTTCGGTGTCATGTTCTATTCAACGGAAGAAGTCAACTAGACCCTTATATAAGAGAAGGAGAGCTTGCATGGATTGGGACTTTTCAGATTGGGAGTATGAGGAGGCACTACCCCTTGGTAACTGCAGTGGAGGACAATCTTCAGGATCATGTTCTCAGCCACAGAGGAAATCAGCTAGACTCTTAACTAAGAGGAAGAGAGTTTGCATGGATTTGGATTTGCTAAATTGGGAGTTGGAGGAGGCTCAAAATGTGGTTCTTCTGGATGATGAAGATCTATGTGGGGAGACAATGGATGGTTCAGATGATGAATGGAAGAAATTCAGATTATATTACCCTTCAAGGAATGACCCAGAATCTGTAGCCCTATCATACTCAGATATGGAATGCCTCAATCCTGAACAATTTTTATCATCACCTGTAATGAACTTCTACATTCAGTACCTTAGAACTGAGTCCACCATAGGTAGGCCCCAGGGTGAATATCATATCTTCAATACGTTCTTTTTTGGAAAGCTAGAAAGGGCTTTATCTCAAAAGGTTGATGGATCACAATGTTTTTTGAAGTTGAGGCGCTGGTGGAAAGGGGTGAATATATTTTCGAAGGCATACATCCTCTTGCCGATACATGGAAGTTCTCATTGGAGCTTAGCGATCATCTGTAACCCAGGAATAGAAGAAGATGACTCTAATCTTCTCATTCTTCATTTGGATTCATTGGGTCTTCATTCAAGCCAACAAATTTCCCAAATTATTTCCATCTTTCTTCAAGAGGAGTGGAACTTCATGAACCAAAATGCTACTGCTGCAGACCTTCCTTTCCCTCTCCAAAGGCATATATGGCAGCATCTTCAACTCAGGATTGATAGGAAGAAAGTTAAGGTCCCACAGCAGAAGAATGAATATGATTGTGGCATCTTCGTTCTCTACTTCATCCAACGTTTCTTAGAGGAAGCTCCTCAACGGCTGAGATTGCATGATCTTTCTATGTTTCATTCAAAGTGGTTTAAGCCTGCTGAGGCTTCCAGCTTAAGAAAGAGAATTCAAAATCTGCTTATCGAAGAATTCAACAAGGCCGCAGGCCTGCCATAGTATCGCGGCTTGTATTCTAATGCGAGAGATGCTTCCAAATACAGTTTTCTTTTTGCCAGGAGAAGCTTAAAAAGGAGTAACTCGTTGAACCTTGATTTTGAAATGGAGCTTTTGTTACTGCTAATAGTAAGTCTGGTCTGATGTTGTTAAGAGAGCCGATATGGATTTTATGTGTGTAGTTTTTGCTGCGCATTTCCTTCTCTTTTTTTTTTGTTAAATGGCAATTAGCCATTCATGTATATATCACGAATGCATGCATGTAATATATTCTATGTTCGTGAATGCCAAACCAGATTAGTGGCTTGAGTTTGGGTTTGACCTAAAAAATAGTTTGAATCCTACTTGAGCGGTATAGCGCCTTGACTCAATGATCG

Network for GWHGAAEX014171

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module6

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02902.18	Peptidase_C48	428	632	4.10E-37

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	ULP

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006508	Biological Process	proteolysis
GO:0008234	Molecular Function	cysteine-type peptidase activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	10.850
SRP064423	SRR2545915	Juvenile tuber	4.420
SRP108465	SRR5643513	five period of Gastrodia elata	2.110
	SRR5643514	five period of Gastrodia elata	1.920
	SRR5643515	five period of Gastrodia elata	0.950
	SRR5643524	five period of Gastrodia elata	1.210
	SRR5643525	five period of Gastrodia elata	2.140
	SRR5643528	five period of Gastrodia elata	1.000
	SRR5643658	five period of Gastrodia elata	1.380
	SRR5643659	five period of Gastrodia elata	1.920
	SRR5643660	five period of Gastrodia elata	4.050
	SRR5643661	five period of Gastrodia elata	2.990
	SRR5643662	five period of Gastrodia elata	3.750
	SRR5643663	five period of Gastrodia elata	3.260
	SRR5643664	five period of Gastrodia elata	5.700
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	3.620
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	2.760
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	3.660
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	10.980
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	16.970
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	20.450
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	9.290
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	16.030
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	3.450
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	3.940
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	2.340
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	2.340
SRP279888	Gastro	Gastrodia elata tuber	8.62
	Juven	Juvenile tuber	3.51
	Mother_Gastro	Mother tuber of Gastrodia elata	2.28
	Mother_Juven	Mother tuber of Juvenile	2.64