Gene detail

Detail information of GWHGAAEX014177/evm.TU.scaffold_57.76

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|392397796\|ref\|YP_006434397.1\|	4.00E-09	DNA-methyltransferase Dcm [Flexibacter litoralis DSM 6794]
nr	gi\|672187579\|ref\|XP_008813372.1\|	0	PREDICTED: DNA (cytosine-5)-methyltransferase DRM2-like [Phoenix dactylifera]
Swissprot	tr\|Q9M548\|DRM2_ARATH	0	DNA (cytosine-5)-methyltransferase DRM2
trEMBL	tr\|B4XTT0\|B4XTT0_ELAGV	0	DRM-type DNA-methyltransferase {ECO:0000313\|EMBL:ABW96890.1}
TAIR	AT5G14620	3.00E-172	domains rearranged methyltransferase 2

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000055	3267457	3286819	-

Transcript Sequence
>GWHTAAEX014177 ATGACCTTAATATTTAATGAAGAATCCGTGAATTCTTATAACAGTAGCAGCAGAACGCCGCTCCAGTTGTCTTTGCTGTATGAACAACGCAGCGAAGTCCCGCGCTTGGGCCTTCAAAGGCGCCGAATCTGTATCTCACCGGAAACCCAAGGGTCGCGTCGTCCTCGCACTTTCTCTATCTTGATCTTAGCTGAATTTTTCATTTCTTCCATTTTCTCTCCCTCCGGTGTCTACATTTCCACTGCCGCTGCAGAGTATTATTCTGATGATCTGATCGTTGTCGTCATCGCTGCCGGCGGTGACCGGTTGTCAATAAGCTCCAAATCAGTCATTCTACTACCCGCCGTCTTGGCCGAGGATTGGGTTAGTGATAATGACGAGAAGGATAGCGACAACTTCAGCTGGGACAGCGATGATGATGACAAGGAATGCCATGCAGACCCTCCTTTGGAGGCTCCTGAGGCAGGTCCTTCTCAGCCAAATTTATATTCCCATTTCATTGGAATGGGTTTTAGTGGGGATATGGTTGAGAAGGCAATCAAGGAAAATGGAGAAGGCAATATAGAAAATATTCTTGAGACTTTACTCACTTATTCGGCTATTGAAAATCCACCTTTAGCCCATGTGGATGCCCCCGAAGGTTCCCCTGTTGTGTTCTCAGTTCACAGCGATGAAGATTCCTTTGACAATGGCATGTGGGATACTGACGACTCTAATGATCTGGATTACACTGAGAGTCTACCAGAGAAAGATAAGAAATTGTTGACATTGGTTGATATGGGTTTTTCTCCTGAGGAGGCAGCTGCAGCTATAGACAGATGTGGACTCGATTCATCAGTTTTGGAGCTTGCAGATTCTATTCATGCTGCTCAAATGGCCGAGGAACCTGATGGAATAGATTGGGATTATCTGAAGCCTCGTTTTGAGATTGCAGAAGGATCTGGCTACTGCTCCACAAGGAGGAAAAGGAAGTTCATCGACGAAAAGCGCAAGCTGAAAAGGAGCTGTCTCTCGCAAAGGAGAAGGGATTATGTGAGGAAACCCAGTATGGATTTTGAGGATGCACCGATGGCCATTCCAAAGCCAATGATAGGCTTTGGCCTTCCCTATGAAAAGTGCTTGGCACGTAGAAGCCTCCCCGAGGCAGCCATCGGCCCTCCGTATTTCTATTACGAGAACGTTGCTCTCGCACCCAAGGGAGTTTGGGACACCATATCACGCTTTCTTTATGACATCGAGCCTGAGTTTGTTGACTCCAAGTACTTTTGTGCTGCGGCCCGGAAAAGGGCTTACATCCACAATCTCCCAATTGAGAACCGGTTTCCCCTCCTCCCCATTCCTCCAAAAACCATCCAAGAGGCCTTGCCCATTACAACGCAGTGGTGGCCCAAATGGGACAAGAGAACGCAGCTCAATTGCTTGCAAACCTGCATTGCCAGCGCTAAATTGACAGAAAGAATTAGAAAGGCCTTGCAAAATTGCGGCAATAATCCCCCGTCAATGGTGCAGGAGTACGTTCTTGCCGAGTGCAGGAAGTGGAACCTTGTGTGGGTTGGCCACAATAAGGTCGCGCCGCTCGAACCCGACGAAGTCGAGATGCTTCTCGGGTTCCCAAACAACCATACACGAGGTGGCGGCATCAGCCGAACAGAGAGATACAAGTCACTTGGAAATTCATTTCAAGTGAATACGGTCGCCTACCACCTCTCAGTGTTGAAGAAGATGTTCCCGAACGGGATCAACTTGCTGTCTCTTTTCTCTGGCATTGGCGGGGCTGAGGTGGCTCTTCACAAGCTCGGCATCCATCTGAAGACGATCGTTTCTGTTGAGAAATCGGAAATCAATCGGAATATAGTGAGGAGCTGGTGGGAACAGACCAACCAGAAGGGCAATCTAATTGATCTGGATGATGTGCAGCAGCTCAACGGCGATAGGCTCGAGAGCTTGATGAAGAGATATGGGGGGTTTGATCTTGTTATAGGTGGAAGCCCCTGCAACAACTTAACGGGTAGCAACCGCTACACACGCGATGGACTGGAAGGCGAGCATTCCTCTCTCTTCTATGATTATTTTCGTATACTCGACCTTGTCAAGTCTATAATGGCCAAGGACTTGTGA

Network for GWHGAAEX014177

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00145.16	DNA_methylase	581	695	2.70E-10

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006306	Biological Process	DNA methylation
GO:0008168	Molecular Function	methyltransferase activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	34.760
SRP064423	SRR2545915	Juvenile tuber	41.440
SRP108465	SRR5643513	five period of Gastrodia elata	28.290
	SRR5643514	five period of Gastrodia elata	32.650
	SRR5643515	five period of Gastrodia elata	25.420
	SRR5643524	five period of Gastrodia elata	27.470
	SRR5643525	five period of Gastrodia elata	21.750
	SRR5643528	five period of Gastrodia elata	20.150
	SRR5643658	five period of Gastrodia elata	24.610
	SRR5643659	five period of Gastrodia elata	28.560
	SRR5643660	five period of Gastrodia elata	26.840
	SRR5643661	five period of Gastrodia elata	25.750
	SRR5643662	five period of Gastrodia elata	24.510
	SRR5643663	five period of Gastrodia elata	27.550
	SRR5643664	five period of Gastrodia elata	25.960
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	41.610
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	33.670
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	42.080
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	40.750
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	37.900
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	37.690
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	43.560
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	38.110
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	44.850
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	41.200
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	38.140
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	38.140
SRP279888	Gastro	Gastrodia elata tuber	27.20
	Juven	Juvenile tuber	33.84
	Mother_Gastro	Mother tuber of Gastrodia elata	18.03
	Mother_Juven	Mother tuber of Juvenile	21.21