Detail information of GWHGAAEX014179/evm.TU.scaffold_57.78
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|146298365|ref|YP_001192956.1| | 3.00E-28 | two component regulator [Flavobacterium johnsoniae UW101] |
| KOG | KOG0619 | 1.00E-141 | FOG: Leucine rich repeat |
| nr | gi|743758101|ref|XP_010925079.1| | 5.57E-169 | PREDICTED: piriformospora indica-insensitive protein 2-like [Elaeis guineensis] |
| Swissprot | tr|Q5PP26|PII2_ARATH | 4.00E-125 | Piriformospora indica-insensitive protein 2 (Precursor) |
| trEMBL | tr|M0TWD5|M0TWD5_MUSAM | 3.00E-158 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr9P00780_001} |
| TAIR | AT1G68780 | 1.00E-141 | RNI-like superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000055 | 3291978 | 3294719 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX014179
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module1 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00560.32 | LRR_1 | 264 | 285 | 0.26 |
| PF13855.5 | LRR_8 | 313 | 372 | 3.40E-07 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.840 |
| SRR2545915 | Juvenile tuber | 1.070 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 2.880 |
| SRR5643514 | five period of Gastrodia elata | 5.710 | |
| SRR5643515 | five period of Gastrodia elata | 2.500 | |
| SRR5643524 | five period of Gastrodia elata | 4.100 | |
| SRR5643525 | five period of Gastrodia elata | 10.090 | |
| SRR5643528 | five period of Gastrodia elata | 2.120 | |
| SRR5643658 | five period of Gastrodia elata | 2.050 | |
| SRR5643659 | five period of Gastrodia elata | 2.010 | |
| SRR5643660 | five period of Gastrodia elata | 0.890 | |
| SRR5643661 | five period of Gastrodia elata | 0.520 | |
| SRR5643662 | five period of Gastrodia elata | 1.310 | |
| SRR5643663 | five period of Gastrodia elata | 1.180 | |
| SRR5643664 | five period of Gastrodia elata | 0.960 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 1.920 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 2.120 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 2.530 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 1.630 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 1.010 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 0.640 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 0.880 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 1.330 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 5.630 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 2.740 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 4.280 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 4.280 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 0.55 |
| Juven | Juvenile tuber | 2.02 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.84 | |
| Mother_Juven | Mother tuber of Juvenile | 0.39 |