Detail information of GWHGAAEX014180/evm.TU.scaffold_57.79


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|182679033|ref|YP_001833179.1|5.00E-15single-strand binding protein [Beijerinckia indica subsp. indica ATCC 9039]
KOGKOG16532.00E-65Single-stranded DNA-binding protein
nrgi|672164232|ref|XP_008801986.1|6.78E-72PREDICTED: single-stranded DNA-binding protein, mitochondrial [Phoenix dactylifera]
Swissprottr|Q84J78|SSBP_ARATH5.00E-23Single-stranded DNA-binding protein, mitochondrial (Precursor)
trEMBLtr|U5CZX7|U5CZX7_AMBTC5.00E-70Uncharacterized protein {ECO:0000313|EMBL:ERN15729.1}
TAIRAT3G185802.00E-65Nucleic acid-binding, OB-fold-like protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000005533312463341369-
Transcript Sequence

Network for GWHGAAEX014180

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module1

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00436.24SSB781851.40E-18
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K03111ssb DNA replication map03030
Mismatch repairmap03430
Homologous recombinationmap03440

Gene Ontology

GO term OntologyName
GO:0003697Molecular Functionsingle-stranded DNA binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms19.730
SRR2545915Juvenile tuber28.000
SRP108465SRR5643513five period of Gastrodia elata40.020
SRR5643514five period of Gastrodia elata48.100
SRR5643515five period of Gastrodia elata38.100
SRR5643524five period of Gastrodia elata41.290
SRR5643525five period of Gastrodia elata7.610
SRR5643528five period of Gastrodia elata5.140
SRR5643658five period of Gastrodia elata4.000
SRR5643659five period of Gastrodia elata48.990
SRR5643660five period of Gastrodia elata49.980
SRR5643661five period of Gastrodia elata61.200
SRR5643662five period of Gastrodia elata59.490
SRR5643663five period of Gastrodia elata48.910
SRR5643664five period of Gastrodia elata55.890
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_141.950
SRR6049655Rhizomagastrodiae_C368-T10_good_144.360
SRR6049656Rhizomagastrodiae_C368-T07_good_147.430
SRR6049657Rhizomagastrodiae_C368-T07_good_135.190
SRR6049658Rhizomagastrodiae_C368-T04_good_134.020
SRR6049659Rhizomagastrodiae_C368-T04_good_127.240
SRR6049660Rhizomagastrodiae_C368-T01_good_141.580
SRR6049661Rhizomagastrodiae_C368-T04_good_139.480
SRR6049662Rhizomagastrodiae_C368-T01_good_173.760
SRR6049663Rhizomagastrodiae_C368-T01_good_155.000
SRR6049664Rhizomagastrodiae_C368-T10_good_162.680
SRR6049665Rhizomagastrodiae_C368-T10_good_162.680
SRP279888GastroGastrodia elata tuber 59.84
JuvenJuvenile tuber76.87
Mother_GastroMother tuber of Gastrodia elata 9.36
Mother_JuvenMother tuber of Juvenile 21.48