Detail information of GWHGAAEX014185/evm.TU.scaffold_57.85


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|387789964|ref|YP_006255029.1|4.00E-171ribonucleotide reductase subunit beta [Solitalea canadensis DSM 3403]
KOGKOG15670Ribonucleotide reductase, beta subunit
nrgi|719983301|ref|XP_010250716.1|0PREDICTED: ribonucleoside-diphosphate reductase small chain [Nelumbo nucifera]
Swissprottr|P49730|RIR2_TOBAC0Ribonucleoside-diphosphate reductase small chain
trEMBLtr|V7D141|V7D141_PHAVU0Uncharacterized protein {ECO:0000313|EMBL:ESW34896.1}
TAIRAT3G270600Ferritin/ribonucleotide reductase-like family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000005535636263564861-
Transcript Sequence

Network for GWHGAAEX014185

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module2

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00268.20Ribonuc_red_sm242912.00E-118
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K10808RRM2 Metabolic pathways map01100
Purine metabolismmap00230
Pyrimidine metabolismmap00240
Glutathione metabolismmap00480
Drug metabolism - other enzymesmap00983
p53 signaling pathwaymap04115

Gene Ontology

GO term OntologyName
GO:0055114Biological Processoxidation-reduction process
GO:0009263Biological Processdeoxyribonucleotide biosynthetic process
GO:0004748Molecular Functionribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor
GO:0005515Molecular Functionprotein binding
GO:0016491Molecular Functionoxidoreductase activity
GO:0005971Cellular Componentribonucleoside-diphosphate reductase complex

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms0.200
SRR2545915Juvenile tuber0.450
SRP108465SRR5643513five period of Gastrodia elata3.040
SRR5643514five period of Gastrodia elata2.270
SRR5643515five period of Gastrodia elata2.120
SRR5643524five period of Gastrodia elata1.430
SRR5643525five period of Gastrodia elata0.400
SRR5643528five period of Gastrodia elata0.770
SRR5643658five period of Gastrodia elata0.160
SRR5643659five period of Gastrodia elata2.200
SRR5643660five period of Gastrodia elata2.340
SRR5643661five period of Gastrodia elata1.500
SRR5643662five period of Gastrodia elata0.800
SRR5643663five period of Gastrodia elata3.110
SRR5643664five period of Gastrodia elata0.400
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_110.620
SRR6049655Rhizomagastrodiae_C368-T10_good_113.670
SRR6049656Rhizomagastrodiae_C368-T07_good_116.330
SRR6049657Rhizomagastrodiae_C368-T07_good_16.930
SRR6049658Rhizomagastrodiae_C368-T04_good_16.150
SRR6049659Rhizomagastrodiae_C368-T04_good_14.770
SRR6049660Rhizomagastrodiae_C368-T01_good_14.650
SRR6049661Rhizomagastrodiae_C368-T04_good_19.160
SRR6049662Rhizomagastrodiae_C368-T01_good_114.070
SRR6049663Rhizomagastrodiae_C368-T01_good_18.070
SRR6049664Rhizomagastrodiae_C368-T10_good_121.390
SRR6049665Rhizomagastrodiae_C368-T10_good_121.390
SRP279888GastroGastrodia elata tuber 1.04
JuvenJuvenile tuber1.10
Mother_GastroMother tuber of Gastrodia elata 3.75
Mother_JuvenMother tuber of Juvenile 0.12