Gene detail

Detail information of GWHGAAEX014199/evm.TU.scaffold_57.109

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|743866941\|ref\|XP_010905188.1\|	9.23E-148	PREDICTED: F-box protein At1g67340-like [Elaeis guineensis]
Swissprot	tr\|Q9FYF9\|FB76_ARATH	2.00E-140	F-box protein At1g67340
trEMBL	tr\|M0TRA6\|M0TRA6_MUSAM	2.00E-145	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr8P17530_001}
TAIR	AT1G67340	6.00E-140	HCP-like superfamily protein with MYND-type zinc finger

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000055	4534571	4536229	+

Transcript Sequence
>GWHTAAEX014199 TTCCCGTCCGCGAAAGCAACGTTAATATAAAAATCAATCGAAGTCGGGTCAGCGAGATTTGACCGAGGGCACAGCTGTAATAAAAAAGCCAATAAGGGCAGAACTGTCATTTATCTATCCTCTGTTCCTCGTTCAGGTATTTAAATCCAGAGCAGGTCCTCTTCGAGGAGGCATCCGTCCTCACAGATTCGGACAAATTGAAGGAACCAAAAAGTGGGGATGCATACCCGCAGCGGGCTTCAGTATCCTCCTCTTCCTCAGAAGAGGAAGCGAGCTCGAACAATGGATTCCCCAATTGATTTCTTCGACGGGATTCCGGACGACATACTCCTCCTCATACTCGCGAACGTGGCCTCCGCCGCAGGATCCCCTTCGGATCTCATCAGCACCGTCCTCACATGCCGGAGATTCAACGAACTGGGGATGAAGAGATCGGTGCTGTGCAAGGTGTCGGCGAAGGGGACGTGGGTGAAATCGAGCGGATGGTCGGATTCGAGCCAGCGATTCCTTGAGCGATGCGCGGATGCTGGGAGTGCGGAGGCCTGCTACACGCTGGGAATGATAAGCTTCTACTGCCTGCGGGAAAGGGGAAAGGGGGCGTCCCTGATGGCGAGGGCGGCCGCCGGGTCTCACCCGGAGGCGCTGCACTCCCTCTCCATCATCCAGTTCAACGGCAGCGGGGGGTCCAAGAGCGACAAGGATCTGAGGGCGGGGGTAGCGCTCTGCGCGCGCGCAGCGTGCCAGGGGCACGTGGACGCGCTGCGGGAGCTGGGGCACTGTTTGCAAGATGGGTACGGCGTGCGGCAGAACGTGGGGGAGGGGCGGCGGTTCTTGGTGCAGGCCAACGCCAGGGAGCTCGCGGCCGTGAGGAAGGGGAGGGGGGATCTGAGGTTCTCCGCTTGCGCCCTGCTCAGCGATTTCGGGTGCAGCCTGCCTGCTCCGGAGGTGCACCCTGCGAACCGGTTCATGGTCGAGTGGTTCGGGGAGAGGGGTGGGCCGGCCGGAGGGGAGGCCGATGGGCTCAGGATGTGCTCACACGGCGGATGCGGCCGGCCGGAGACCAGGCGACATGAGTTCCGCCGCTGCTCCGTCTGCGGAGTCGTCAATTACTGTTCGCGAGCCTGCCAGGCGATGCATTGGAAGCTGGAGCATAAGACCGAATGTGCGCCGTTGGATCGGTGGATAGAAGGGGCCGCCGCGATCCAAGGGGTTCATTTGTAGCAGGGCCGAGGGGTTAGTTAGTCCGTAGGAGGGTTTCTTTTCTCTCTCTCAAGGTTTGGTTGTTGTTTTATATATATATATATATATATATATATATATATTATATTTTGATCGAATACTCTCGACGAGTGTTTGCTTGTGATTATTGCGTAGAGATCATCTTATTTTTTGTAATATTAAGATTTTTTTTAAAAAAAAAAATTCAGCTTTTCCATTAAAAGCATCTTTAGTAATTCAAAAATTCCAATTTCTCAAAAATGAATTTTGTTGCCTCGGTGCATTTTCTTATGTGGGATTTAAGTCTCTCTTATTTTAGTTTTTAAAATAATTAGTTTATAGTTTGAGACAAGTTAGAAGATTTTTCTTAGTATTG

Network for GWHGAAEX014199

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module4

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01753.17	zf-MYND	276	315	4.00E-08

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	29.900
SRP064423	SRR2545915	Juvenile tuber	25.580
SRP108465	SRR5643513	five period of Gastrodia elata	64.220
	SRR5643514	five period of Gastrodia elata	43.540
	SRR5643515	five period of Gastrodia elata	71.390
	SRR5643524	five period of Gastrodia elata	32.480
	SRR5643525	five period of Gastrodia elata	227.200
	SRR5643528	five period of Gastrodia elata	158.090
	SRR5643658	five period of Gastrodia elata	162.000
	SRR5643659	five period of Gastrodia elata	102.520
	SRR5643660	five period of Gastrodia elata	90.920
	SRR5643661	five period of Gastrodia elata	109.740
	SRR5643662	five period of Gastrodia elata	109.130
	SRR5643663	five period of Gastrodia elata	66.050
	SRR5643664	five period of Gastrodia elata	164.510
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	101.390
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	52.770
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	76.230
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	81.550
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	87.090
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	92.100
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	109.700
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	85.300
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	45.030
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	76.280
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	88.440
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	88.440
SRP279888	Gastro	Gastrodia elata tuber	46.04
	Juven	Juvenile tuber	76.68
	Mother_Gastro	Mother tuber of Gastrodia elata	322.96
	Mother_Juven	Mother tuber of Juvenile	171.83