Gene detail

Detail information of GWHGAAEX014202/evm.TU.scaffold_57.113

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|189501798\|ref\|YP_001957515.1\|	5.00E-11	hypothetical protein Aasi_0363 [Candidatus Amoebophilus asiaticus 5a2]
KOG	KOG0504	0	FOG: Ankyrin repeat
nr	gi\|743814515\|ref\|XP_010930059.1\|	0	PREDICTED: serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B [Elaeis guineensis]
Swissprot	tr\|Q9ZU96\|Y2168_ARATH	2.00E-13	Ankyrin repeat-containing protein At2g01680
trEMBL	tr\|D5G0H2\|D5G0H2_VITVI	0	Ankyrin-like protein {ECO:0000313\|EMBL:ACZ56416.1}
TAIR	AT3G01750	0	Ankyrin repeat family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000055	4743375	4747536	+

Transcript Sequence
>GWHTAAEX014202 ATCTCCGTTCTTAATGATACTCCTCACAAGCGCACTTACACCCTCCTAGTCCCGAAGCTCCACCCACTCCCGCACCACTGAAGAAAAATCTATTCAATACACTGTCTCATGGATGCCGGATCTACTTCTCAAAAAGGTGTTTTGACACCTCCATTGTCTTCTCAAATGGCTACTTCTCGTTAGCTCTATTTTATGGCATCTCCTTTGCCTCATTATCTTGCATTTTCTAGAAATTTCGTCCAGTGCTTCTTTTTTTCTCCTTCCCAATGCCAGTATTTAAGCTCTATATCTTAAAATGTGTTCTCAATTTCAGTTTTCCATGTCTTGCTTCTGTGTGCTCCATGCTTTCTTCGCATTTTCTCAAATGGAAAGCATTCAACTTGCAGAGCCTCACTCCTTAACCATGGAATCCCTTTCCCTCCATTTTCCATTGTGAAAATCTAACAGAAAAGAACCCCTTTTCTTCAAGTGGCCTTCTTTCTTGTTTGCTTGCCTCCCTCTTCATCCCAATGGGTCAATCTTACTTTCCTCTTCGTTGGGAGAGCACTGGAGACCAGTGGTGGTATGCTTCCCCTATTGACTGGGCAGCATCCAACGGCCACTATGAACTTGTCAGAGAGCTCCTCCACCTTGACACCAACCTCCTTATTAAGCTCACTTCTCTTCGCCGGATACGGCGACTTGAGACTGTATGGGATGATGATGCACAGTTCATTGATGCTGCCAAATGCCGGTCTTGGGTTGCCCAGAATCTTCTCCATGAATGTGAAACAAAGAACAATAAAAACAGCCTGATAAGCGCCGGCTATGGCGGTTGGCTTTTGTATACTGCCTCTTCTGCTGGAGACATTGATTTTGTTAATGAATTGCTTGAGAGAGATCCACTTCTTGTGTTTGGAGAGGGTGAATATGGCATCACAGACATATTCTATGCAGCTGCAAGGGGAAGGAATACTGATGTGTTTAGGCTTATCTTTGTGAATGCGATGTTTCCGAGGCATTTTGTTGGTGTTGGAGAAGGGATTGAGGGCGATTTTAAGGGAGAGAATGGGAATGCTTCAGTTTTCAGGAGGGAGATTGTGAACAGGGCTGTTCTTGCTTCTGCTAGAGGAGGAAATTTGGAGATGTTGAAGGAGCTTCTTGGTGAGTGCTCTGATGTCTTGGCTTACAGGGATAGTCAGGGATCTACAGTTTTGCATGCTGCATCTGGAAGAGGACAGCTTGAAATTGCTAATAATCTTATCACATCCTTCAACATCATTGAATCAAGAGACAATCATGGGAACACGGCATTACATGTCGCCGCATTTTGTGGGCATTTACCGATTGTCAAGGCCTTGATATCAGCTGCCCCCTTGTTACCATTTTTAAAAAACAACGCCGGTGATACTTTCCTTCACATGGTTATAGCAGGCTTTAGAACTTCTGGTTTCCACAGGCTCGACCGGCAAATGGAGCTCATCAAGCAGTTGATTCATGGCAACATAGTGAACATTCGGGAAATCATCAATATTCAAAACAATGATGGAAGAACTGCTCTCCACGTCGCAGCGATTGGCAGCATGCACTGTAACGTTGCTGAGGTTCTTATCACTGTCTCTTCGATTGAACTCAACATTCGAGACGTCGATGGCATGACACCGCTCGACCTTCTCTGCCTGCGTCCTCGTTCTGCTTCTTCTGAGATTCTCATCAAGCTGCTGGTATCAGCTGGAGGAATTCATAATTCAAGGGATTTAAAGGCTGAATCTGCCAATGTTTCTCAGCTAAGGATGCAATCTGGCATTAGGAACAGCCCAGGAACCTCTTTCGGAATCTCTGATGCTGAAATATTCTTGCATGCTGGCTTTGAAACACCAGATGTTAGTGGAAGGGAAAGCTCAAGCACAAGCATAGGAAGGAGTGAGCTTCCTCACTTTGAGCATATTGAAGAAAGTAATGAGTATTCAGTCAAAAGGAAGGGCTCAAGCTCTGCCAACAGCACAGCGAGTCGGCTCAAGGTACTGCTCAGGTGGTCCCGTCCCAAGGAGAAGAAAACCGAGGAAATTCCAATGCCACTGCGTCAGAGATTTTCAAAGTCACAATCATCTCTTGTAAACAACAAAAGAACACTTGCAGTGAGGACCATAGTGCCAAGCCCGGCAGCAAAGAAGAAATTTACAGCTGGACTTATGCATGGTGTCATCCAGGCCATGCCACATCTAGCACATTCGCAGTCACGGATGTCAGTAAGCCCTCTATCTAGTTCACTTGTCTCTTCATCAACATTTGAAAAACAGAAGGGGGTTTGTGAAGATGATGAAGCAATCCGCGATACCGCCTGCTCTAACGCAGCAAAGAGTTCGTCTCGGAGATCGAGATTGAAGAATGCCAAGCTCATGAATCAGTACTTCTGCTTCGGAACTCAAGGATTAGCAGTGGACGATTCATCGGCCAATCAACGACATAGTCGATTCTTCAGAGGTTGTGTTCCTCCAGTTTCTTGAAGAAGAAATACTGAGAATGGAGGAAAGCAGGTTCTAATAAAAGTTTACTGCACTTTTAGTAGTTATCTTGGAGAAAGTGTTTTTTTGGTTTCTGTTCCTTATAGTGTGAGTTATGAATCTGTCTAAACTGGTTTTAGTTTATGAAGAGCTTTTAATGTTTGCATGGCTATTTAGCCCTTCTATTTAATTTTCTAGTGTTAGACTTATGATGTAAGGAATGCTCTGGCTTGGTTTGTGATTGTATTAAAACTATGAGGGTAGTAAGAAATGCATTTTGAGTATGAATCTTGAAATTAAACGTTTCAACAATCTTAAATGTTATCACTGAATGAACTTGTATGCTGCTGAAG

Network for GWHGAAEX014202

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module2

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12796.6	Ank_2	197	279	6.20E-13
PF00023.29	Ank	339	372	0.007

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	1.580
SRP064423	SRR2545915	Juvenile tuber	16.120
SRP108465	SRR5643513	five period of Gastrodia elata	6.350
	SRR5643514	five period of Gastrodia elata	8.250
	SRR5643515	five period of Gastrodia elata	4.900
	SRR5643524	five period of Gastrodia elata	6.040
	SRR5643525	five period of Gastrodia elata	5.840
	SRR5643528	five period of Gastrodia elata	9.040
	SRR5643658	five period of Gastrodia elata	5.240
	SRR5643659	five period of Gastrodia elata	6.280
	SRR5643660	five period of Gastrodia elata	3.080
	SRR5643661	five period of Gastrodia elata	4.820
	SRR5643662	five period of Gastrodia elata	3.400
	SRR5643663	five period of Gastrodia elata	3.910
	SRR5643664	five period of Gastrodia elata	3.920
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	11.770
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	14.640
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	12.130
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	7.470
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	5.260
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	3.330
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	6.490
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	10.390
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	17.940
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	6.990
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	18.950
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	18.950
SRP279888	Gastro	Gastrodia elata tuber	2.72
	Juven	Juvenile tuber	6.61
	Mother_Gastro	Mother tuber of Gastrodia elata	0.51
	Mother_Juven	Mother tuber of Juvenile	2.81