Detail information of GWHGAAEX014207/evm.TU.scaffold_57.119
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|521459603|ref|YP_008153931.1| | 1.00E-87 | ATP-dependent helicase [Sorangium cellulosum So0157-2] |
| KOG | KOG0920 | 0 | ATP-dependent RNA helicase A |
| nr | gi|695017447|ref|XP_009395662.1| | 0 | PREDICTED: ATP-dependent RNA helicase DHX36 [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|O22899|DHX15_ARATH | 2.00E-101 | Probable pre-mRNA-splicing factor ATP-dependent RNA helicase |
| trEMBL | tr|M0SLX0|M0SLX0_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr4P07530_001} |
| TAIR | AT1G48650 | 0 | DEA(D/H)-box RNA helicase family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000055 | 4906284 | 4959842 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX014207
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00270.28 | DEAD | 262 | 413 | 1.70E-06 |
| PF00271.30 | Helicase_C | 519 | 650 | 8.40E-14 |
| PF04408.22 | HA2 | 714 | 803 | 1.80E-20 |
| PF07717.15 | OB_NTP_bind | 870 | 951 | 8.70E-16 |
| PF00035.25 | dsrm | 1055 | 1117 | 1.90E-06 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K14442 | DHX36, RHAU | RNA degradation | map03018 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005524 | Molecular Function | ATP binding |
| GO:0004386 | Molecular Function | helicase activity |
| GO:0003676 | Molecular Function | nucleic acid binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 15.530 |
| SRR2545915 | Juvenile tuber | 12.950 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 14.260 |
| SRR5643514 | five period of Gastrodia elata | 14.600 | |
| SRR5643515 | five period of Gastrodia elata | 13.310 | |
| SRR5643524 | five period of Gastrodia elata | 13.690 | |
| SRR5643525 | five period of Gastrodia elata | 15.990 | |
| SRR5643528 | five period of Gastrodia elata | 12.140 | |
| SRR5643658 | five period of Gastrodia elata | 14.210 | |
| SRR5643659 | five period of Gastrodia elata | 15.770 | |
| SRR5643660 | five period of Gastrodia elata | 15.320 | |
| SRR5643661 | five period of Gastrodia elata | 13.140 | |
| SRR5643662 | five period of Gastrodia elata | 14.470 | |
| SRR5643663 | five period of Gastrodia elata | 15.750 | |
| SRR5643664 | five period of Gastrodia elata | 16.930 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 14.520 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 14.320 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 13.820 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 15.570 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 14.120 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 14.130 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 15.040 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 12.350 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 15.700 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 14.630 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 13.820 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 13.820 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 20.51 |
| Juven | Juvenile tuber | 20.45 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 20.82 | |
| Mother_Juven | Mother tuber of Juvenile | 16.20 |