Detail information of GWHGAAEX014211/evm.TU.scaffold_57.123
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|392377852|ref|YP_004985011.1| | 3.00E-14 | glycosyl transferase group 1 (modular protein), partial [Azospirillum brasilense Sp245] |
| nr | gi|743814022|ref|XP_010929902.1| | 0 | PREDICTED: beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase-like isoform X2 [Elaeis guineensis] |
| trEMBL | tr|M0RIV4|M0RIV4_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr10P16790_001} |
| TAIR | AT3G27540 | 0 | beta-1,4-N-acetylglucosaminyltransferase family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000055 | 5246699 | 5249083 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX014211
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF04724.12 | Glyco_transf_17 | 41 | 385 | 5.50E-175 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GT17 |
| Carbohydrate-Active enzymes Family | GT17 |
| Carbohydrate-Active enzymes Family | GT17 |
| Carbohydrate-Active enzymes Family | GT17 |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K00737 | MGAT3 | Metabolic pathways | map01100 |
| N-Glycan biosynthesis | map00510 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006487 | Biological Process | protein N-linked glycosylation |
| GO:0003830 | Molecular Function | beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity |
| GO:0016020 | Cellular Component | membrane |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 23.090 |
| SRR2545915 | Juvenile tuber | 28.400 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 13.250 |
| SRR5643514 | five period of Gastrodia elata | 15.950 | |
| SRR5643515 | five period of Gastrodia elata | 15.830 | |
| SRR5643524 | five period of Gastrodia elata | 12.820 | |
| SRR5643525 | five period of Gastrodia elata | 34.740 | |
| SRR5643528 | five period of Gastrodia elata | 17.950 | |
| SRR5643658 | five period of Gastrodia elata | 27.360 | |
| SRR5643659 | five period of Gastrodia elata | 14.490 | |
| SRR5643660 | five period of Gastrodia elata | 11.800 | |
| SRR5643661 | five period of Gastrodia elata | 13.870 | |
| SRR5643662 | five period of Gastrodia elata | 18.320 | |
| SRR5643663 | five period of Gastrodia elata | 14.910 | |
| SRR5643664 | five period of Gastrodia elata | 18.880 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 28.310 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 17.930 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 25.840 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 21.070 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 21.580 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 20.490 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 25.230 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 22.790 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 29.670 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 37.210 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 25.520 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 25.520 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 20.04 |
| Juven | Juvenile tuber | 11.34 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 19.20 | |
| Mother_Juven | Mother tuber of Juvenile | 15.04 |