Detail information of GWHGAAEX014218/evm.TU.scaffold_58.2
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG1638 | 7.00E-83 | Steroid reductase |
| nr | gi|672124140|ref|XP_008785445.1| | 4.03E-96 | PREDICTED: steroid 5-alpha-reductase DET2 [Phoenix dactylifera] |
| Swissprot | tr|Q38944|DET2_ARATH | 2.00E-83 | Steroid 5-alpha-reductase DET2 |
| trEMBL | tr|M0SN32|M0SN32_MUSAM | 1.00E-94 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr4P11670_001} |
| TAIR | AT2G38050 | 7.00E-83 | 3-oxo-5-alpha-steroid 4-dehydrogenase family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000054 | 77027 | 82172 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX014218
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module3 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF02544.15 | Steroid_dh | 113 | 264 | 8.10E-43 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K09591 | DET2 | Metabolic pathways | map01100 |
| Biosynthesis of secondary metabolites | map01110 | ||
| Brassinosteroid biosynthesis | map00905 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0008202 | Biological Process | steroid metabolic process |
| GO:0006629 | Biological Process | lipid metabolic process |
| GO:0055114 | Biological Process | oxidation-reduction process |
| GO:0016627 | Molecular Function | oxidoreductase activity, acting on the CH-CH group of donors |
| GO:0003865 | Molecular Function | 3-oxo-5-alpha-steroid 4-dehydrogenase activity |
| GO:0016020 | Cellular Component | membrane |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 1.560 |
| SRR2545915 | Juvenile tuber | 2.070 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 3.170 |
| SRR5643514 | five period of Gastrodia elata | 3.380 | |
| SRR5643515 | five period of Gastrodia elata | 2.970 | |
| SRR5643524 | five period of Gastrodia elata | 3.930 | |
| SRR5643525 | five period of Gastrodia elata | 4.080 | |
| SRR5643528 | five period of Gastrodia elata | 3.630 | |
| SRR5643658 | five period of Gastrodia elata | 3.260 | |
| SRR5643659 | five period of Gastrodia elata | 12.460 | |
| SRR5643660 | five period of Gastrodia elata | 18.210 | |
| SRR5643661 | five period of Gastrodia elata | 5.300 | |
| SRR5643662 | five period of Gastrodia elata | 12.820 | |
| SRR5643663 | five period of Gastrodia elata | 13.670 | |
| SRR5643664 | five period of Gastrodia elata | 11.590 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 2.780 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 4.270 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 3.130 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 2.110 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 1.670 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 1.460 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 2.320 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 2.220 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 4.570 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 2.870 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 3.910 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 3.910 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 3.38 |
| Juven | Juvenile tuber | 3.46 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 2.15 | |
| Mother_Juven | Mother tuber of Juvenile | 4.44 |