Detail information of GWHGAAEX014220/evm.TU.scaffold_58.6


Functional Annotation

DatabaseOrthologsE valueAnnotation
nrgi|672169856|ref|XP_008804974.1|2.38E-67PREDICTED: protein RDM1 isoform X3 [Phoenix dactylifera]
Swissprottr|Q9LUJ3|RDM1_ARATH3.00E-55Protein RDM1
trEMBLtr|Q67IW5|Q67IW5_ORYSJ2.00E-58cDNA clone:J023105O05, full insert sequence {ECO:0000313|EMBL:BAG92620.1}
TAIRAT3G226802.00E-53RNA-DIRECTED DNA METHYLATION 1

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000054255697274755-
Transcript Sequence

Network for GWHGAAEX014220

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF09187.9RdDM_RDM1521674.90E-55
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0044030Biological Processregulation of DNA methylation
GO:0005634Cellular Componentnucleus

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms15.390
SRR2545915Juvenile tuber21.630
SRP108465SRR5643513five period of Gastrodia elata25.140
SRR5643514five period of Gastrodia elata27.850
SRR5643515five period of Gastrodia elata19.600
SRR5643524five period of Gastrodia elata21.440
SRR5643525five period of Gastrodia elata15.880
SRR5643528five period of Gastrodia elata14.280
SRR5643658five period of Gastrodia elata14.320
SRR5643659five period of Gastrodia elata23.790
SRR5643660five period of Gastrodia elata22.280
SRR5643661five period of Gastrodia elata21.180
SRR5643662five period of Gastrodia elata22.700
SRR5643663five period of Gastrodia elata18.900
SRR5643664five period of Gastrodia elata18.900
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_125.510
SRR6049655Rhizomagastrodiae_C368-T10_good_135.000
SRR6049656Rhizomagastrodiae_C368-T07_good_122.310
SRR6049657Rhizomagastrodiae_C368-T07_good_123.590
SRR6049658Rhizomagastrodiae_C368-T04_good_122.530
SRR6049659Rhizomagastrodiae_C368-T04_good_121.960
SRR6049660Rhizomagastrodiae_C368-T01_good_121.790
SRR6049661Rhizomagastrodiae_C368-T04_good_120.990
SRR6049662Rhizomagastrodiae_C368-T01_good_121.870
SRR6049663Rhizomagastrodiae_C368-T01_good_125.890
SRR6049664Rhizomagastrodiae_C368-T10_good_127.850
SRR6049665Rhizomagastrodiae_C368-T10_good_127.850
SRP279888GastroGastrodia elata tuber 30.38
JuvenJuvenile tuber39.97
Mother_GastroMother tuber of Gastrodia elata 18.38
Mother_JuvenMother tuber of Juvenile 27.09