Gene detail

Detail information of GWHGAAEX014222/evm.TU.scaffold_58.10

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|310823878\|ref\|YP_003956236.1\|	1.00E-44	DNA helicase [Stigmatella aurantiaca DW4/3-1]
KOG	KOG1804	0	RNA helicase
nr	gi\|672169836\|ref\|XP_008804960.1\|	0	PREDICTED: probable RNA helicase SDE3 [Phoenix dactylifera]
Swissprot	tr\|Q8GYD9\|SDE3_ARATH	0	Probable RNA helicase SDE3
trEMBL	tr\|M0SHR2\|M0SHR2_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr3P25460_001}
TAIR	AT1G05460	0	P-loop containing nucleoside triphosphate hydrolases superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000054	321953	338929	+

Transcript Sequence
>GWHTAAEX014222 ATGGGAACTTATGTTGAGAAGGAATGCGATGAAGAATATTCTGAAATTGGAGACAAGGGTGATGTTGGTTTCTTGGATTTTGCGGATGATAAATCACTAAACAATTTTAATCCTTTTGAGGAAAGACCTGTTGTGATTTCAATCCCTTTTCCCTTTATTGGTGGAAAGCCACGATCAGCTTTTCTTGGGGAGACATCTTCTGATCCTATCAACATCAAAAACACTACGAATGAGTCGGTTGAATTGTGGAGCATTCGGATATTTTCTTCTAACCCAGAGGGTTCATATGCCCTTTCGTTGATGAAGCCACCATCTACTGATGCTGATGAGAGAGAAATTGATGCATTTGTGGAGTCAGATGCCTTGGAAGATAGGGTGCTTCAACCAAGGCAGACTCTCACTATTTGGCTTTCATGCAGGCCTAAAGAAATAGGATTGCACACTTCAGTTGTGCATTTTGATGTAGATTCTGGAAAAATTGAGCGAGTTGCATTTTTGTTGGCCGATGATATAGTGTCCCAAGGTCTGGTTTCTAAAAAACCTTACTCAAGAGTTCCACCTCGAAGACAGATGTTCGAGTATGAAAATTGTGCAACTGGTCCACGGCCACCTCGGACAATCACACAGGCACCACATAGATACATTGTGCCTGAATATCCCATACCTAAAGAAATCCGACAGCTGGTTGAGACTAAACAAGTTCCTGATGTCGTACGGGATGGACTAAATTCCTTAAACTATGCCAGATTTTTCTGCTTGTTAATTAACATTGAAGAAATTTATCTAGAGGAAGAGATGCGAGCTTATGACATGGAGTTGGTGAGTATGAAGAGGAGGGGCGGTCAATTTTTATCTCTCGAGGTTCCTGGCTTGGCTGAGAGAAGGCCGTCTCTCGTTTATGGAGATTTTATTTTTGTTCAAGTTGCCACATATAAGCAGGACGTGAACTTTCACACTTCTAAGGGTTATATTTACAAAGTTGAAGCTGATGAAATTCTCTTAAAATTTGATAAGCAACTGCACCAATTTCATCGGGATGATCACCTCTACAATGTTAGCTTCACTTACAACAGAACATGTATGAGAAGATTATATTATGTTGTTAAAGCTGCAGAGCGTTTGGGACCTGAAATTCTCTTTCCATTTCAGTCAGCTAACAGAAGGGTTATCAATACAACTCCTTTTCAGCCATTGAATCCATATCTTAATAGAGAACAGATAATTTCTGTTGAAATGATTTTGGGTTGCAGAGGCTTTCCACCCTATGTGATCCATGGACCTCCTGGCACTGGAAAGACGAAGACACTTGTTGAGGCAATACTGCAGCTCTACACTACAAGGAGAAAAGCAAAAATCCTTGTATGTGCTTCTTCAAATTGTGCAGCAGATCATGTTTTGGAAAAGTTGCTTGCTGAGGATGGGGTGGGGGTGAGAGAAAATGAAATATTCAGGCTAAATGCAACATCTCGCCCATATGAAGATGTCAAAACTGAGTTTATTAGGTTTTGCTTCTTTGAGGATACAACTTTTAAATGCCCTCCACTTAAGGCTTTGCTGCATTACAGGGTCATTGTATCAACTTATATGAGTGCGTTTCTGCTACACGTCGAAGGCATTCATAGGGGCCATTTCTCTCACATTTTCCTTGATGAGTCTGGCCAAGTCACTGAACCAGATACATTGGTTCCCATATCAACCTTGTGTGCAAAAAAGAGTGTTGTTGTTCTTGCAGGAGATCCTATGCAGCTTGGTCCTGTTGTCTATTCTGGTGAGGCAGAAAAGTATGGGTTAGGAAAATCGTACTTGGAAAGGCTATTTGAGTTTGAATATTATGAGCGAGGTGATGAGAATTATGTCACCAAACTGTTGAGGAACTATCGCTCTCACCCTGCTATCTTGGAGCTCCCTTCAAAAATTTTCTACAATGGTGAATTGTTATCTTGCAAAGATGATGACGAATCTTCTATTTATGACTGGGCTGACCTTCCAAATAAAACATTTCCAGTTCTATTTGTTGGAATTCAAGGGTGTGATGAGAGGGAAGGTAATAATCCATCATGGTTTAATAGAATTGAGGCTAGTAAAACTGTAAATATCATAAGAAAATTATTAAGGAACACTGAACTCAGTGGGGGTGATATTGGAGTCATTACTCCATATAGGCAACAAGTGCTAAAGTTACAGAAAGCCTTAGAGTCTGTTGACATACCAGATGTTAAGGTTGGAAGCGTCGAACAATTTCAAGGTCAGGAAAGAAAAATAATTATCATATCGACCGTCCGATCAACTGTTCGACATAATGAGTTTGACAGAGTTTACAGCTTGGGTTTTCTTAGCAATCCTCGAAGGTTTAATGTTTCCATCACCAGGGCTAAGTCTTTGCTTATTATAATTGGAAATCCACACATAATAAGTAAGGATCCTTACTGGGAGAAACTATTGAGATATTGTGTGGATAATGGTTCTTATCAGGGCTGTCCACTACCTCCACTAGAAAACCAAGATTTTCCTGGTCAGTGTACACCGCCTTCTCTTGATCATGGCATTGAAAAACTAAACTTCAAAGATGCTGAATGGGGACAAATCCTAGTAAAAAAGGCTGAACAAAGTGGATGGGGTGAGGAAGCTTCAGAACAATATAGCAAGAAAGATGAATTCCATGAAGAAGATCCACAGAAATATGCTGATGATACTGAATGGGGTGAAGCTGCCCAGTTCTCCAAAGAGGGACAAAGGTTGGGAAATGGCTCTGAGTTTGAATATAATTCTGACAAATGTGGATGGGGTAATATGGATGATAATACCGCTTGGAGTGAATCTGCTGATGCAGTAACAAAGAATGAAACATCTAATTTTGAGGGATCTGGCTTTCAAGGAGACCTTATACAATGCCAAAAGGAAGTTGAATGGAAGGGTTTCACCTTCACAGCTACCGGTTGGGATGATTAG

Network for GWHGAAEX014222

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13086.5	AAA_11	402	496	5.20E-16
PF13086.5	AAA_11	520	589	1.40E-09
PF13087.5	AAA_12	598	801	2.60E-48

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	15.310
SRP064423	SRR2545915	Juvenile tuber	19.310
SRP108465	SRR5643513	five period of Gastrodia elata	14.920
	SRR5643514	five period of Gastrodia elata	16.110
	SRR5643515	five period of Gastrodia elata	13.890
	SRR5643524	five period of Gastrodia elata	14.230
	SRR5643525	five period of Gastrodia elata	16.770
	SRR5643528	five period of Gastrodia elata	15.140
	SRR5643658	five period of Gastrodia elata	16.650
	SRR5643659	five period of Gastrodia elata	12.550
	SRR5643660	five period of Gastrodia elata	12.900
	SRR5643661	five period of Gastrodia elata	11.120
	SRR5643662	five period of Gastrodia elata	9.340
	SRR5643663	five period of Gastrodia elata	13.310
	SRR5643664	five period of Gastrodia elata	10.380
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	10.560
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	10.320
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	10.160
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	11.800
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	6.240
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	5.030
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	7.350
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	6.300
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	9.580
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	6.530
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	13.060
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	13.060
SRP279888	Gastro	Gastrodia elata tuber	16.53
	Juven	Juvenile tuber	21.71
	Mother_Gastro	Mother tuber of Gastrodia elata	16.63
	Mother_Juven	Mother tuber of Juvenile	24.26