Detail information of GWHGAAEX014225/evm.TU.scaffold_58.17
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|434400469|ref|YP_007134473.1| | 9.00E-14 | WD-40 repeat-containing protein [Stanieria cyanosphaera PCC 7437] |
| KOG | KOG3914 | 1.00E-42 | WD repeat protein WDR4 |
| nr | gi|672169826|ref|XP_008804955.1| | 1.00E-166 | PREDICTED: tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit wdr4 [Phoenix dactylifera] |
| trEMBL | tr|M0TMK6|M0TMK6_MUSAM | 4.00E-161 | tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit {ECO:0000256|HAMAP-Rule:MF_03056} |
| TAIR | AT1G03110 | 1.00E-42 | Transducin/WD40 repeat-like superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000054 | 902053 | 947990 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX014225
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00400.31 | WD40 | 62 | 91 | 0.00051 |
| PF00400.31 | WD40 | 152 | 182 | 2.30E-05 |
| PF00400.31 | WD40 | 200 | 236 | 4.80E-06 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | DWD |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0036265 | Biological Process | RNA (guanine-N7)-methylation |
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 18.680 |
| SRR2545915 | Juvenile tuber | 23.810 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 24.070 |
| SRR5643514 | five period of Gastrodia elata | 26.140 | |
| SRR5643515 | five period of Gastrodia elata | 22.930 | |
| SRR5643524 | five period of Gastrodia elata | 25.920 | |
| SRR5643525 | five period of Gastrodia elata | 15.630 | |
| SRR5643528 | five period of Gastrodia elata | 14.480 | |
| SRR5643658 | five period of Gastrodia elata | 13.250 | |
| SRR5643659 | five period of Gastrodia elata | 22.010 | |
| SRR5643660 | five period of Gastrodia elata | 22.140 | |
| SRR5643661 | five period of Gastrodia elata | 22.120 | |
| SRR5643662 | five period of Gastrodia elata | 25.240 | |
| SRR5643663 | five period of Gastrodia elata | 23.420 | |
| SRR5643664 | five period of Gastrodia elata | 23.510 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 20.800 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 18.430 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 23.170 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 23.000 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 18.230 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 15.700 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 18.040 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 19.400 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 31.460 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 23.430 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 29.230 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 29.230 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 20.40 |
| Juven | Juvenile tuber | 23.20 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 13.71 | |
| Mother_Juven | Mother tuber of Juvenile | 15.57 |