Gene detail

Detail information of GWHGAAEX014227/evm.TU.scaffold_58.22

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG2744	3.00E-55	DNA-binding proteins Bright/BRCAA1/RBP1 and related proteins containing BRIGHT domain
nr	gi\|672201314\|ref\|XP_008778105.1\|	1.80E-133	PREDICTED: high mobility group B protein 15-like isoform X2 [Phoenix dactylifera]
Swissprot	tr\|Q9MAT6\|HMG15_ARATH	5.00E-101	High mobility group B protein 15
trEMBL	tr\|M0TUF0\|M0TUF0_MUSAM	2.00E-122	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr8P28470_001}
TAIR	AT1G04880_1	3.00E-55	Unannotated protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000054	1203586	1209463	+

Transcript Sequence
>GWHTAAEX014227 TCATTCTTCTTGTTTTTATATAAACATGAACGCATTGTTATACTGTTACCTAATCCGCATCTGAGATGAGTCCATGGAGGTTGATCCAGCCGGAGCTGGTCATGTGGGTAAGGAAGGTTCGCCGTCGTACGGGCCCGCCATTAGTGAGGGTTAGGCGAAGTAAGCCGCCGATGGCTGAACGGCAATTCTTTTCCGCATGCGATTATTTTGATGCAATCTCAAACTTGATCGAAGCTCAAGATTTGTTGCTCCTTCCGTAGAGGGTGCGGAGTACATGATGGAAGTTGAAGCCAAGGTAACAGAGGCGGAGCGCGTCAGCAGAGGAAAGGAGCTATTCGAGCCGAAGCTGAGTCTTAAGCAGGCTGGAGATGAGGAGATTGGACCCAAATACAACAACTATCAGCCTTATCCTGACGCCAATGCAAGTTACCAAGAAGTTCTTGATGATAAAATACTATTTATGAAATCACTCGAGGAGTTGCATCTTGCAATGCGAACCAAGTTTATGGTCCCTATTATAGGAGGAAAGGAGCTTGATCTGCATCAATTATTCCAAGAAGTTACATCTAGAGGTGGTATTGAAAAGGTTATTACTGATAGAAAATGGAGAGAAGTTACAAACACCTTTAACTTCCCATCGACTGCAACGAACGCTTCGTTCGTCCTACGAAAATACTACGCCTCTTTACTGCGCCACTATGAACAAATCTACTTCTTCGGAGCGAAAGGGTGGACTGTTCCTTCTGCCGTTCCTTTTTGCACAGCTTCTATCTTTCAACCTGAAAAGAGTATTGATTCAGCATACCCTTTCCATGAAGCCCAATCTGCCTCACGCAAAAGGAGGAGGGGCAACGAAGAGACTGCCCTGACAGCGGCGGCATTAAGCCCGTCATCGGCCTGCGAGCGAGGCGCAGCCGTTGCCGGCATCATCGACGGGAAATTCGAGGACGGATACTTCATCACGGTGACGATCGGGGCGAAGAAGCTGAAGGGCATCATCTTCCATTCTTCGCAGCAGAATGCCGCGTTTCCGGGAAGCCTGGCGGGAGTTTCCCGCCGTCGCCGAAGAAGAAAGAAGCTCAGCTCGATCGATCCCTCGCATCCGAAGCCCAACAGGAGCGGCTACAATTTCTTCTTTGCGGAGCAGCACGCAAGGCTGAAGCTGCTCCATCCGGGAAAGGACAGAGAGATCAGCCGAATGATCGGCGATCTCTGGAACAATCTGTCGGAGCCCCAGAGAGCTGTGTATCAAGAGATCGGTTTGAAGGACAAGGAGAGGTATCAGACGGAGATGGCGGTGTACAGGGAGAGGCAAAAGAACGGCAACGGCCCAGTCTTAGCGAACGTGATGCCGATACAGCAGCGGGATGTGAGGAAGGAAGCTGGTGCTGACAGTACCGACTTGTTTTCAGCGGATGAGACGGATGCCGAGGAAGAAGAATCGGCCGCTGAAGAAGATTCCGCGGAAGCCAATGGGGAATCCGCTGCGGCCGCCGCGGCGTTCGAGCTGAGGAGGAGAGACTCGAACGAAGCTGAGAATGGCGCCGAGACGACCGCTCCGTGCGATTTGCCTCAGAGAACTGAGGAGGAGTTGCAAGGCAAGTAATCGGCTCTCGGATCGCGCAGAATCTGTTTGCCTTTTTATAATGAAAGCTCTTTTTGTTCTTCTTTTGATCTTTTGTTTCGGAGCCATGTTTTGCTTTTGAATGGAATGAATGTGTTTCTCAAAGAAGCCACTTTTGAAGCTCTCTCTAATGCTCAAGCTATGCTTTTGTATTTTTTTTTTTTTCTAAATCTTTTTAATTTCGTTGCATCTTTGATTCTTTTTGATCTCCTTCAAATTCAAATGCCCACTTCTTCATGTGCTTGGATTCTTTTTTTTTATTATATTTTGATCTTAGTTTTAAGACTATATATTGTACATTTTGG

Network for GWHGAAEX014227

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01388.20	ARID	61	143	1.10E-17
PF00505.18	HMG_box	277	344	5.60E-13

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	ARID

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	Molecular Function	DNA binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	6.420
SRP064423	SRR2545915	Juvenile tuber	3.810
SRP108465	SRR5643513	five period of Gastrodia elata	7.340
	SRR5643514	five period of Gastrodia elata	7.500
	SRR5643515	five period of Gastrodia elata	5.660
	SRR5643524	five period of Gastrodia elata	6.060
	SRR5643525	five period of Gastrodia elata	8.070
	SRR5643528	five period of Gastrodia elata	6.290
	SRR5643658	five period of Gastrodia elata	6.920
	SRR5643659	five period of Gastrodia elata	7.290
	SRR5643660	five period of Gastrodia elata	8.150
	SRR5643661	five period of Gastrodia elata	6.740
	SRR5643662	five period of Gastrodia elata	7.330
	SRR5643663	five period of Gastrodia elata	7.750
	SRR5643664	five period of Gastrodia elata	7.260
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	5.830
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	5.830
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	6.460
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	6.810
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	6.270
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	5.950
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	6.880
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	5.360
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	6.590
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	4.440
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	7.010
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	7.010
SRP279888	Gastro	Gastrodia elata tuber	11.07
	Juven	Juvenile tuber	9.89
	Mother_Gastro	Mother tuber of Gastrodia elata	8.45
	Mother_Juven	Mother tuber of Juvenile	9.62