Gene detail

Detail information of GWHGAAEX014229/evm.TU.scaffold_58.27

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG0698	3.00E-178	Serine/threonine protein phosphatase
nr	gi\|643714211\|gb\|KDP26876.1\|	0	hypothetical protein JCGZ_18034 [Jatropha curcas]
Swissprot	tr\|Q9M8R7\|P2C33_ARATH	9.00E-179	Probable protein phosphatase 2C 33
trEMBL	tr\|A0A067JSD6\|A0A067JSD6_JATCU	0	Uncharacterized protein {ECO:0000313\|EMBL:KDP26876.1}
TAIR	AT3G02750	3.00E-178	Protein phosphatase 2C family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000054	1656498	1669478	+

Transcript Sequence
>GWHTAAEX014229 AGTTTGTTCGACGGAGGAGTCAGCTGGTAACGTGGGAATCGTCTCTCTGGCTGGTCTGGAGTGCATATTAAGCTTAATCAGGGCCCTAAATATGGGTTCCTGTCTGTCGACGGGAGGCGGCGAAGCCAGCCAGAGTTGTTCGGTGCCTTCTCCTCCATGCTCCGGTTCTCCGGGGTTGGGATCGAAAAAGGCAAAGAGGATTGGGAGGAAGAGGCAGGGACCATCACTGCGCTCATCTTTTGAATCGACCTTAGAAGAGGATCAGATTCACCGAATTCCGGGAAGATTGTTCCTTAATGGTGCTACTAATCAAGCGTCCCTCTTCACCAAGCAAGGAAAGAAGGGAACAAATCAGGATGCTATGGTTGTTTGGGAGAATTTTGGTTCAAAGACAGACACTGTTTTTTGTGGAGTTTTTGATGGACATGGCCCATTTGGTCATCTGGTTGCAAGGAGGGTGAGGGATTGTCTTCCACTTAAGCTGAGTGCACATTGGGAAGCAATTCTAGGAGTTGAAGAGCTGAGGCCGAGCAGCATTAGCACAACAGGAAGCATGACCTCAGAAGAAATGACATCCATATTCTTAGATGATAATTTCAAGGCTTCCATTGATTTTGAAGAGGAGAAGCTTCCGGAGATCTTCACCACCCTGAAGGAGTCATTCTTGAAGGCATTCAAAGTTACGGATAAAGAACTAAAGTTACATCAAAATATAGACTGTTTTTGCAGTGGGACGACTGCAGTCACCCTAGTGAAGCAGGGTCAAAATCTCATCATTGGAAATGTTGGTGATTCTAGAGCTGTTTTGGGCACTAGAGATCAGAATGACAGCTTGGTTGCAGTTCAGTTAACTGTTGATCTCAAGCCAAATCTTCCCAGGGAGGCTGAGAGAATCAAACGATACAGAGGAAGGGTTTTTTCTCTTCATGATGAGCCAGAAGTAGCGCGCATTTGGCTGCCAAACAATGACTCCCCGGGCTTGGCGATGGCTCGTGCTTTTGGAGATTTTTGCCTCAAGGACTTTGGCCTGATCTCCGTGCCCGAGATTTCCTTCCGTCACATCACCGACAAGGACGAGTTCATCATCTTAGCTACCGATGGGGTCTGGGACGTGCTCTCCAACCAGGAAGCGGTGGACATCGTTGCCTCGGCAACTACTAGATCTTCCGCTTCTCGATCTCTGGTCGAGCACGCAATCCGCCTGTGGAAGTTCAAGTTCCCGACTTCCAAAGTCGATGATTGTGCCGCGGTCTGCCTCTTTCTGGACACCACAGATGATGCCAACAAGGCTGAAGAACCATCATCATCATTGAGGGAAGAAGCCATCCCTCCGGGCAGCGGCTCGACAAAGCAGCCGGTCGGCGGCAATCCTGCAGCTGTGGAAAGCGAGAATTGGTCGGCATTGGAGGGCGTGACTCGCACGAACACCCTGTTGACCCTGCCGAGGTTTGTCGACGGCGGCAAGCCTGGACGGATCAAGTGAGCAGCTGCCAGGGTACTTTTTTTATAATTATTATGGCAATAGTGCCTATTATTATTAATTAATATTAGTAGTAGTAGCTAGCCTTGCCAGGTTCTTTTCATCATGCTTTTGTGCTACGTGGGTGTGAGCAGGATTAGAGTTTTAGTAAAAATCCAAACTCAATCATCAGTGCTGTGTTTTAGTTTTATTTCTCTGTTAACTGTTAACTGTTCAATGATTTTGGCCATTTTTTACTATTGTGGTTGGTTACATGAAATCCTTTGCTTACATTATGATATGATCAAATACAAGGACTTCCCTAAGTTCTAAATTAAGAAGAAGATTTTTTTCTAATAATTTCTTATGCTTTTTTATGTTATTTCTTTTCCTCTTTTA

Network for GWHGAAEX014229

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00481.20	PP2C	174	370	9.50E-43

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003824	Molecular Function	catalytic activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	35.540
SRP064423	SRR2545915	Juvenile tuber	30.250
SRP108465	SRR5643513	five period of Gastrodia elata	53.720
	SRR5643514	five period of Gastrodia elata	41.600
	SRR5643515	five period of Gastrodia elata	44.900
	SRR5643524	five period of Gastrodia elata	40.300
	SRR5643525	five period of Gastrodia elata	96.450
	SRR5643528	five period of Gastrodia elata	79.750
	SRR5643658	five period of Gastrodia elata	85.290
	SRR5643659	five period of Gastrodia elata	54.700
	SRR5643660	five period of Gastrodia elata	56.000
	SRR5643661	five period of Gastrodia elata	54.620
	SRR5643662	five period of Gastrodia elata	58.530
	SRR5643663	five period of Gastrodia elata	59.110
	SRR5643664	five period of Gastrodia elata	56.020
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	42.530
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	38.180
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	44.320
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	44.030
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	44.580
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	41.290
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	42.010
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	42.570
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	37.630
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	42.170
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	47.780
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	47.780
SRP279888	Gastro	Gastrodia elata tuber	61.04
	Juven	Juvenile tuber	52.45
	Mother_Gastro	Mother tuber of Gastrodia elata	54.45
	Mother_Juven	Mother tuber of Juvenile	42.67