Detail information of GWHGAAEX014231/evm.TU.scaffold_58.29


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|392391663|ref|YP_006428266.1|1.00E-27isopentenyl-diphosphate delta-isomerase [Ornithobacterium rhinotracheale DSM 15997]
KOGKOG01428.00E-138Isopentenyl pyrophosphate:dimethylallyl pyrophosphate isomerase
nrgi|602181970|gb|AHN91472.1|6.03E-149isopentenyl diphosphate isomerase [Dendrobium catenatum]
Swissprottr|O48964|IDI1_CAMAC2.00E-142Isopentenyl-diphosphate Delta-isomerase I
trEMBLtr|X2L2U9|X2L2U9_9ASPA2.00E-149Isopentenyl diphosphate isomerase {ECO:0000313|EMBL:AHN91472.1}
TAIRAT5G164408.00E-138isopentenyl diphosphate isomerase 1

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000005418059181811769-
Transcript Sequence

Network for GWHGAAEX014231

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module4

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00293.27NUDIX1112451.40E-18
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K01823idi, IDI Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Biosynthesis of antibioticsmap01130
Terpenoid backbone biosynthesismap00900

Gene Ontology

GO term OntologyName
GO:0008299Biological Processisoprenoid biosynthetic process
GO:0016787Molecular Functionhydrolase activity
GO:0004452Molecular Functionisopentenyl-diphosphate delta-isomerase activity

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms246.880
SRR2545915Juvenile tuber187.780
SRP108465SRR5643513five period of Gastrodia elata127.240
SRR5643514five period of Gastrodia elata146.250
SRR5643515five period of Gastrodia elata139.090
SRR5643524five period of Gastrodia elata137.280
SRR5643525five period of Gastrodia elata235.440
SRR5643528five period of Gastrodia elata217.450
SRR5643658five period of Gastrodia elata348.450
SRR5643659five period of Gastrodia elata119.710
SRR5643660five period of Gastrodia elata126.340
SRR5643661five period of Gastrodia elata126.620
SRR5643662five period of Gastrodia elata122.760
SRR5643663five period of Gastrodia elata116.010
SRR5643664five period of Gastrodia elata141.600
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_1194.960
SRR6049655Rhizomagastrodiae_C368-T10_good_1152.440
SRR6049656Rhizomagastrodiae_C368-T07_good_1168.640
SRR6049657Rhizomagastrodiae_C368-T07_good_1224.920
SRR6049658Rhizomagastrodiae_C368-T04_good_1251.800
SRR6049659Rhizomagastrodiae_C368-T04_good_1278.580
SRR6049660Rhizomagastrodiae_C368-T01_good_1191.250
SRR6049661Rhizomagastrodiae_C368-T04_good_1233.260
SRR6049662Rhizomagastrodiae_C368-T01_good_1124.760
SRR6049663Rhizomagastrodiae_C368-T01_good_1139.610
SRR6049664Rhizomagastrodiae_C368-T10_good_1164.140
SRR6049665Rhizomagastrodiae_C368-T10_good_1164.140
SRP279888GastroGastrodia elata tuber 113.18
JuvenJuvenile tuber75.90
Mother_GastroMother tuber of Gastrodia elata 509.54
Mother_JuvenMother tuber of Juvenile 69.36