Detail information of GWHGAAEX014232/evm.TU.scaffold_58.30
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|343085920|ref|YP_004775215.1| | 1.00E-49 | RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745] |
| nr | gi|695032160|ref|XP_009403616.1| | 0 | PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At3g28040 [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|Q9LRT1|Y3804_ARATH | 0 | Probably inactive leucine-rich repeat receptor-like protein kinase At3g28040 (Precursor) |
| trEMBL | tr|Q8LQ10|Q8LQ10_ORYSJ | 0 | Uncharacterized protein {ECO:0000313|EMBL:EAZ14887.1} |
| TAIR | AT3G28040 | 0 | Leucine-rich receptor-like protein kinase family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000054 | 1903431 | 1906427 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX014232
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module2 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF08263.11 | LRRNT_2 | 32 | 71 | 4.60E-08 |
| PF00560.32 | LRR_1 | 175 | 197 | 0.11 |
| PF00560.32 | LRR_1 | 199 | 218 | 1.2 |
| PF00560.32 | LRR_1 | 272 | 291 | 1.7 |
| PF13855.5 | LRR_8 | 319 | 378 | 2.30E-06 |
| PF00069.24 | Pkinase | 630 | 866 | 4.80E-23 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Protein Kinases Family | RLK-Pelle_LRR-III |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006468 | Biological Process | protein phosphorylation |
| GO:0004672 | Molecular Function | protein kinase activity |
| GO:0005515 | Molecular Function | protein binding |
| GO:0005524 | Molecular Function | ATP binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.990 |
| SRR2545915 | Juvenile tuber | 5.090 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 11.070 |
| SRR5643514 | five period of Gastrodia elata | 13.220 | |
| SRR5643515 | five period of Gastrodia elata | 11.250 | |
| SRR5643524 | five period of Gastrodia elata | 8.910 | |
| SRR5643525 | five period of Gastrodia elata | 1.460 | |
| SRR5643528 | five period of Gastrodia elata | 0.600 | |
| SRR5643658 | five period of Gastrodia elata | 1.750 | |
| SRR5643659 | five period of Gastrodia elata | 20.070 | |
| SRR5643660 | five period of Gastrodia elata | 16.260 | |
| SRR5643661 | five period of Gastrodia elata | 19.290 | |
| SRR5643662 | five period of Gastrodia elata | 9.530 | |
| SRR5643663 | five period of Gastrodia elata | 14.590 | |
| SRR5643664 | five period of Gastrodia elata | 11.170 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 21.350 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 20.780 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 18.490 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 13.500 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 7.800 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 4.070 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 10.930 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 12.060 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 25.860 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 14.140 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 16.930 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 16.930 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 6.88 |
| Juven | Juvenile tuber | 6.05 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 2.33 | |
| Mother_Juven | Mother tuber of Juvenile | 0.98 |