Gene detail

Detail information of GWHGAAEX014234/evm.TU.scaffold_58.34

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|126698341\|ref\|YP_001087238.1\|	2.00E-58	ATP-dependent RNA helicase [Clostridium difficile 630]
KOG	KOG0332	0	ATP-dependent RNA helicase
nr	gi\|695065299\|ref\|XP_009421236.1\|	0	PREDICTED: DEAD-box ATP-dependent RNA helicase 38-like isoform X1 [Musa acuminata subsp. malaccensis]
Swissprot	tr\|Q10RI7\|RH38_ORYSJ	0	DEAD-box ATP-dependent RNA helicase 38
trEMBL	tr\|A0A097PLX4\|A0A097PLX4_9ASPA	0	LOS4 {ECO:0000313\|EMBL:AIU49040.1} (Fragment)
TAIR	AT3G53110	0	P-loop containing nucleoside triphosphate hydrolases superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000054	2131637	2151485	-

Transcript Sequence
>GWHTAAEX014234 CTAATTTCCTGTGCACAACTCATAACGAATTGTAACCATCAGTCATTTTTTTTATGCGGAGCTCTATTGAAGAACCCTAGGATCTCTACTCTGCCAGTCACCCATTGCACATCTCTACCAAAGTCCCCGCCTTAGTCATCGCGTTTCAATGTCGAAAGACAGCAGTTCATCCGCCACTACGAAGACGGAGGCGAAGAAATCGTGGGCCGACGAGCAATCGGATGATGAAGCTACTTCCTCCGCTGACCGGCTACCCAGTGGCGGCGAGGATGTAGACCAGAAAGAGCTCACTAAAATCGAGTCCCTCTCGATATCAAAGGGCAAGGGAAATGACAAAGATGAGTATAAGGATGGTGGCGATGGGCTACTAGACAACCCTGCAGATTCAGATATCAAAGCTGTTACGGCTGGGGATACGGTGTATTTATCGGCCTTGAGTTTTGATGATCTGAATCTGTCAAAGGAATTGCTTAAGGGATTATACACTGAGATGAGATTTCAGAGACCGAGCAAGATACAGGCCATAAGCCTTCCAATGATCCTTTCCCCACCGTATAAGGATTTAGTTGCGCAGGCTCATAATGGCTCGGGGAAGACAACATGCTTTGTGCTCGGCATGTTGAGTCGGGTTGATCCTAACAAAAATTTACCTCAGGCTATGTGTATTTGCCCTACTAGAGAACTAGCACAGCAGAATCAAGCTGTTCTCTTAAAGATGGGAAAGTTCACTGGCATTACATCTTTCTTGGCTATTCCTGCTGATTCAGCCAATTATGTACCGATCTCCAAATTGCCTCCGGTAACTGATCAAGTTGTGATTGGCACTCCAGGCACTATCAAAAAGTGGACATCAGGTAGAAAACTGAGTATTAGAGAAATGAAGATTCTTGTTTTTGATGAGGCGGATCACATGCTTGCTGAGGATGGTTTTAGGGATGATTCTTTGAGGATCATGAAAGAGATACAAAGCAGCAGCACTGTAGGTTGCCAGGTCCTTTTGTTTTCTGCAACATTTAATGATGCAGTCAAGTTATTTGTATCAAGGGTTGTTAAAGATGGAAATCAGATATTTGTCAAGAAAGAAGAACTCACGCTTGACAAAGTGAAGCAATATAAGGTTGACTGTTTTGATGAACATGCTAAAATTCAAGTCATTAAAGATAAGATATTTGAATTCGGGCAAAAGGTTGGGCAAACTATAATATTTGTGCACACGAGGAATAGTGCTAAAATGCTGCATCATACATTATCTAAAGATGGATATGAGTGCACAGCAGTTCAAGGAGCCCTGAAGCAAGAAGACAGGGACAAGATTATCAAAGAGTTTAAAGATGGAATAACCAAAGTTCTCATAACCACTGACCTTCTAGCTCGAGGTTTTGATCAGTCACAGGTTAATTTAGTCATCAACTACGATCTTCCCGTTAAACATGAATTGCCATCTGAGCCTGATTATGAAGTTTATTTACATAGAATTGGAAGAACTGGGCGCTTTGGACGCAAAGGTGCTGCGTTCAACTTGCTGTGCACTGATCGGGATAAGATGCTCATGGAGAAGATCGAGCGCCACTTCAACCACCACATACCTGAGGTTGGGCCATGGCAGAGCGAGGAAGCTTTTGAAAAAGCTCTCAAAGATGCTGGCTTGCTGTAGTCTGCTTTAGAAAAACGACACTGCCATGACTGAGGAAGTGTTTGAGAGGCTTTTGAAGAATTAAACTGCCCGAGCTTGTATGATACCATGCACTATAGTAGGTAATGATAATTTCCATATTTAGCATCCCCATTTTTATATTTATAAATAAATCATTCTCATCTTATTATTTATTTATCAAATAAGTGCTCGTCTCTTACATGGTTAGTTGGGATGAGAATCGTTAGAGGATTATATAAAGTGCTTGAGTCGACTCTTGAATTGCTGGTCGAGATATTAAGAGTTTAGCTGTATAAAATTTGGAATAAAAGATACTCAGAATAGCGCTATTGGCCACAAATTTGTTTCATATCTGAAGTTCATTTGATTTTAAATTTAGAAATTATTTTAAATTTCTGAAAATATGAGCATGTAAAACTTAGATTTTGCTTTTTGTGAATGATTTTAGGTTCATTTTTAAGTTGTTATTTTTCTTATTGTTTTTGATTAAATGTAAACTAATTTTATTTTATTTAAAAATAATATAGCTTGTATGATACCA

Network for GWHGAAEX014234

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00270.28	DEAD	122	294	7.70E-32
PF00271.30	Helicase_C	332	450	2.40E-25

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005524	Molecular Function	ATP binding
GO:0003676	Molecular Function	nucleic acid binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	58.560
SRP064423	SRR2545915	Juvenile tuber	68.270
SRP108465	SRR5643513	five period of Gastrodia elata	53.450
	SRR5643514	five period of Gastrodia elata	53.450
	SRR5643515	five period of Gastrodia elata	52.790
	SRR5643524	five period of Gastrodia elata	57.660
	SRR5643525	five period of Gastrodia elata	61.210
	SRR5643528	five period of Gastrodia elata	76.010
	SRR5643658	five period of Gastrodia elata	56.890
	SRR5643659	five period of Gastrodia elata	62.190
	SRR5643660	five period of Gastrodia elata	63.660
	SRR5643661	five period of Gastrodia elata	70.180
	SRR5643662	five period of Gastrodia elata	62.750
	SRR5643663	five period of Gastrodia elata	65.790
	SRR5643664	five period of Gastrodia elata	62.970
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	48.700
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	58.090
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	48.770
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	44.090
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	41.380
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	42.520
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	39.160
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	43.400
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	53.070
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	48.080
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	65.740
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	65.740
SRP279888	Gastro	Gastrodia elata tuber	61.63
	Juven	Juvenile tuber	54.70
	Mother_Gastro	Mother tuber of Gastrodia elata	43.64
	Mother_Juven	Mother tuber of Juvenile	59.48