Detail information of GWHGAAEX014236/evm.TU.scaffold_58.36


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|146304610|ref|YP_001191926.1|1.00E-09DNA-directed RNA polymerase L [Metallosphaera sedula DSM 5348]
KOGKOG43921.00E-65RNA polymerase, subunit L
nrgi|695033463|ref|XP_009404217.1|3.14E-74PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 11-like [Musa acuminata subsp. malaccensis]
Swissprottr|Q38859|NRPBB_ARATH4.00E-66DNA-directed RNA polymerases II, IV and V subunit 11
trEMBLtr|M0T693|M0T693_MUSAM1.00E-74Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr6P11950_001}
TAIRAT3G520901.00E-65DNA-directed RNA polymerase, RBP11-like

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000005422837472293361+
Transcript Sequence

Network for GWHGAAEX014236

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13656.5RNA_pol_L_2311032.40E-25
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K03008RPB11, POLR2J RNA polymerase map03020

Gene Ontology

GO term OntologyName
GO:0006366Biological Processtranscription from RNA polymerase II promoter
GO:0006351Biological Processtranscription, DNA-templated
GO:0046983Molecular Functionprotein dimerization activity
GO:0001055Molecular FunctionRNA polymerase II activity
GO:0005665Cellular ComponentDNA-directed RNA polymerase II, core complex

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms58.220
SRR2545915Juvenile tuber79.800
SRP108465SRR5643513five period of Gastrodia elata61.170
SRR5643514five period of Gastrodia elata69.610
SRR5643515five period of Gastrodia elata73.640
SRR5643524five period of Gastrodia elata76.610
SRR5643525five period of Gastrodia elata48.210
SRR5643528five period of Gastrodia elata43.510
SRR5643658five period of Gastrodia elata33.650
SRR5643659five period of Gastrodia elata96.870
SRR5643660five period of Gastrodia elata112.140
SRR5643661five period of Gastrodia elata126.030
SRR5643662five period of Gastrodia elata126.110
SRR5643663five period of Gastrodia elata122.740
SRR5643664five period of Gastrodia elata106.940
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_151.600
SRR6049655Rhizomagastrodiae_C368-T10_good_1104.190
SRR6049656Rhizomagastrodiae_C368-T07_good_157.400
SRR6049657Rhizomagastrodiae_C368-T07_good_151.550
SRR6049658Rhizomagastrodiae_C368-T04_good_153.250
SRR6049659Rhizomagastrodiae_C368-T04_good_142.650
SRR6049660Rhizomagastrodiae_C368-T01_good_147.920
SRR6049661Rhizomagastrodiae_C368-T04_good_149.350
SRR6049662Rhizomagastrodiae_C368-T01_good_161.100
SRR6049663Rhizomagastrodiae_C368-T01_good_154.350
SRR6049664Rhizomagastrodiae_C368-T10_good_164.010
SRR6049665Rhizomagastrodiae_C368-T10_good_164.010
SRP279888GastroGastrodia elata tuber 99.75
JuvenJuvenile tuber96.77
Mother_GastroMother tuber of Gastrodia elata 40.02
Mother_JuvenMother tuber of Juvenile 52.01