Detail information of GWHGAAEX014238/evm.TU.scaffold_58.39
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|17227780|ref|NP_484328.1| | 3.00E-18 | hypothetical protein all0284 [Nostoc sp. PCC 7120] |
| KOG | KOG1063 | 0 | RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily |
| nr | gi|743823440|ref|XP_010932527.1| | 0 | PREDICTED: elongator complex protein 2 isoform X1 [Elaeis guineensis] |
| Swissprot | tr|F4I1S7|ELP2_ARATH | 0 | Elongator complex protein 2 |
| trEMBL | tr|M0TSU7|M0TSU7_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr8P22940_001} |
| TAIR | AT1G49540 | 0 | elongator protein 2 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000054 | 2483501 | 2525319 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX014238
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00400.31 | WD40 | 51 | 98 | 0.01 |
| PF00400.31 | WD40 | 214 | 255 | 0.0016 |
| PF00400.31 | WD40 | 300 | 344 | 0.15 |
| PF00400.31 | WD40 | 402 | 439 | 5.80E-05 |
| PF00400.31 | WD40 | 682 | 712 | 0.00043 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | DWD |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 21.170 |
| SRR2545915 | Juvenile tuber | 18.960 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 10.500 |
| SRR5643514 | five period of Gastrodia elata | 10.960 | |
| SRR5643515 | five period of Gastrodia elata | 10.220 | |
| SRR5643524 | five period of Gastrodia elata | 10.380 | |
| SRR5643525 | five period of Gastrodia elata | 12.080 | |
| SRR5643528 | five period of Gastrodia elata | 12.240 | |
| SRR5643658 | five period of Gastrodia elata | 12.250 | |
| SRR5643659 | five period of Gastrodia elata | 13.110 | |
| SRR5643660 | five period of Gastrodia elata | 13.140 | |
| SRR5643661 | five period of Gastrodia elata | 11.890 | |
| SRR5643662 | five period of Gastrodia elata | 14.490 | |
| SRR5643663 | five period of Gastrodia elata | 13.730 | |
| SRR5643664 | five period of Gastrodia elata | 14.070 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 15.030 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 14.020 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 15.820 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 15.430 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 15.650 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 17.550 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 17.070 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 16.870 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 15.100 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 16.140 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 13.300 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 13.300 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 19.70 |
| Juven | Juvenile tuber | 17.73 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 8.36 | |
| Mother_Juven | Mother tuber of Juvenile | 10.90 |