Detail information of GWHGAAEX014239/evm.TU.scaffold_58.41
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|209963785|ref|YP_002296700.1| | 7.00E-25 | 50S ribosomal protein L21 [Rhodospirillum centenum SW] |
| KOG | KOG1686 | 2.00E-48 | Mitochondrial/chloroplast ribosomal L21 protein |
| nr | gi|695056534|ref|XP_009416493.1| | 4.18E-72 | PREDICTED: 50S ribosomal protein L21, mitochondrial [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|Q8L9A0|RM21_ARATH | 7.00E-62 | 50S ribosomal protein L21, mitochondrial (Precursor) |
| trEMBL | tr|M0TXY1|M0TXY1_MUSAM | 2.00E-72 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr9P06220_001} |
| TAIR | AT4G30930_2 | 2.00E-48 | Unannotated protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000054 | 2742416 | 2769777 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX014239
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00829.20 | Ribosomal_L21p | 121 | 221 | 3.50E-34 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K02888 | RP-L21, MRPL21, rplU | Ribosome | map03010 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006412 | Biological Process | translation |
| GO:0003723 | Molecular Function | RNA binding |
| GO:0003735 | Molecular Function | structural constituent of ribosome |
| GO:0005840 | Cellular Component | ribosome |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 21.480 |
| SRR2545915 | Juvenile tuber | 21.020 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 27.370 |
| SRR5643514 | five period of Gastrodia elata | 31.790 | |
| SRR5643515 | five period of Gastrodia elata | 31.000 | |
| SRR5643524 | five period of Gastrodia elata | 28.570 | |
| SRR5643525 | five period of Gastrodia elata | 31.850 | |
| SRR5643528 | five period of Gastrodia elata | 38.510 | |
| SRR5643658 | five period of Gastrodia elata | 33.810 | |
| SRR5643659 | five period of Gastrodia elata | 30.150 | |
| SRR5643660 | five period of Gastrodia elata | 30.860 | |
| SRR5643661 | five period of Gastrodia elata | 29.980 | |
| SRR5643662 | five period of Gastrodia elata | 29.610 | |
| SRR5643663 | five period of Gastrodia elata | 33.050 | |
| SRR5643664 | five period of Gastrodia elata | 26.890 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 30.780 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 58.860 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 32.230 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 28.970 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 29.170 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 26.210 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 31.380 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 29.930 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 42.530 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 37.900 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 45.040 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 45.040 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 29.76 |
| Juven | Juvenile tuber | 39.63 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 37.36 | |
| Mother_Juven | Mother tuber of Juvenile | 35.80 |