Detail information of GWHGAAEX014245/evm.TU.scaffold_58.52
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|434390988|ref|YP_007125935.1| | 0 | Copper amine oxidase domain-containing protein [Gloeocapsa sp. PCC 7428] |
| KOG | KOG1186 | 0 | Copper amine oxidase |
| nr | gi|743876728|ref|XP_010907652.1| | 0 | PREDICTED: copper amine oxidase 1 [Elaeis guineensis] |
| Swissprot | tr|Q43077|AMO_PEA | 1.00E-76 | Primary amine oxidase (Precursor) |
| trEMBL | tr|M0T4R3|M0T4R3_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr6P06650_001} |
| TAIR | AT2G42490 | 0 | Copper amine oxidase family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000054 | 3442851 | 3494043 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX014245
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module6 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF02727.15 | Cu_amine_oxidN2 | 8 | 106 | 1.70E-05 |
| PF02728.15 | Cu_amine_oxidN3 | 133 | 236 | 2.30E-29 |
| PF01179.19 | Cu_amine_oxid | 262 | 675 | 1.40E-155 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0055114 | Biological Process | oxidation-reduction process |
| GO:0009308 | Biological Process | amine metabolic process |
| GO:0048038 | Molecular Function | quinone binding |
| GO:0005507 | Molecular Function | copper ion binding |
| GO:0008131 | Molecular Function | primary amine oxidase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 566.000 |
| SRR2545915 | Juvenile tuber | 82.660 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 197.600 |
| SRR5643514 | five period of Gastrodia elata | 117.460 | |
| SRR5643515 | five period of Gastrodia elata | 115.610 | |
| SRR5643524 | five period of Gastrodia elata | 139.520 | |
| SRR5643525 | five period of Gastrodia elata | 103.720 | |
| SRR5643528 | five period of Gastrodia elata | 142.550 | |
| SRR5643658 | five period of Gastrodia elata | 147.770 | |
| SRR5643659 | five period of Gastrodia elata | 134.320 | |
| SRR5643660 | five period of Gastrodia elata | 100.810 | |
| SRR5643661 | five period of Gastrodia elata | 112.400 | |
| SRR5643662 | five period of Gastrodia elata | 82.800 | |
| SRR5643663 | five period of Gastrodia elata | 92.910 | |
| SRR5643664 | five period of Gastrodia elata | 78.680 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 295.360 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 197.580 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 197.330 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 472.510 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 622.130 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 768.880 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 415.180 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 400.150 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 179.130 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 180.040 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 167.010 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 167.010 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 40.86 |
| Juven | Juvenile tuber | 127.00 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 30.01 | |
| Mother_Juven | Mother tuber of Juvenile | 53.75 |