Detail information of GWHGAAEX014247/evm.TU.scaffold_58.54


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG27448.00E-50DNA-binding proteins Bright/BRCAA1/RBP1 and related proteins containing BRIGHT domain
nrgi|672188601|ref|XP_008813622.1|1.09E-120PREDICTED: high mobility group B protein 15-like [Phoenix dactylifera]
Swissprottr|Q9MAT6|HMG15_ARATH6.00E-89High mobility group B protein 15
trEMBLtr|M0TUF0|M0TUF0_MUSAM5.00E-110Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr8P28470_001}
TAIRAT1G04880_18.00E-50Unannotated protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000005436650023746694+
Transcript Sequence

Network for GWHGAAEX014247

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01388.20ARID581422.10E-15
PF00505.18HMG_box2783451.10E-11
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyARID

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0003677Molecular FunctionDNA binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms8.890
SRR2545915Juvenile tuber12.050
SRP108465SRR5643513five period of Gastrodia elata7.900
SRR5643514five period of Gastrodia elata6.940
SRR5643515five period of Gastrodia elata6.350
SRR5643524five period of Gastrodia elata6.810
SRR5643525five period of Gastrodia elata12.000
SRR5643528five period of Gastrodia elata13.340
SRR5643658five period of Gastrodia elata14.350
SRR5643659five period of Gastrodia elata11.430
SRR5643660five period of Gastrodia elata9.830
SRR5643661five period of Gastrodia elata9.860
SRR5643662five period of Gastrodia elata10.160
SRR5643663five period of Gastrodia elata9.220
SRR5643664five period of Gastrodia elata8.910
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_15.400
SRR6049655Rhizomagastrodiae_C368-T10_good_18.870
SRR6049656Rhizomagastrodiae_C368-T07_good_15.840
SRR6049657Rhizomagastrodiae_C368-T07_good_14.560
SRR6049658Rhizomagastrodiae_C368-T04_good_15.120
SRR6049659Rhizomagastrodiae_C368-T04_good_15.310
SRR6049660Rhizomagastrodiae_C368-T01_good_16.190
SRR6049661Rhizomagastrodiae_C368-T04_good_17.740
SRR6049662Rhizomagastrodiae_C368-T01_good_16.120
SRR6049663Rhizomagastrodiae_C368-T01_good_15.710
SRR6049664Rhizomagastrodiae_C368-T10_good_17.210
SRR6049665Rhizomagastrodiae_C368-T10_good_17.210
SRP279888GastroGastrodia elata tuber 10.56
JuvenJuvenile tuber8.20
Mother_GastroMother tuber of Gastrodia elata 10.76
Mother_JuvenMother tuber of Juvenile 10.51