Detail information of GWHGAAEX014250/evm.TU.scaffold_58.57
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG0845 | 0 | Nuclear pore complex, Nup98 component (sc Nup145/Nup100/Nup116) |
| nr | gi|743870024|ref|XP_010905946.1| | 0 | PREDICTED: nuclear pore complex protein NUP96 [Elaeis guineensis] |
| Swissprot | tr|Q8LLD0|NUP96_ARATH | 0 | Nuclear pore complex protein NUP96 {ECO:0000303|PubMed:21189294} |
| trEMBL | tr|M0SVL8|M0SVL8_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr5P04390_001} |
| TAIR | AT1G80680 | 0 | SUPPRESSOR OF AUXIN RESISTANCE 3 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000054 | 3832363 | 3902101 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX014250
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF04096.13 | Nucleoporin2 | 27 | 161 | 2.50E-32 |
| PF12110.7 | Nup96 | 551 | 832 | 5.40E-69 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K14297 | NUP98, ADAR2, NUP116 | RNA transport | map03013 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006913 | Biological Process | nucleocytoplasmic transport |
| GO:0017056 | Molecular Function | structural constituent of nuclear pore |
| GO:0005643 | Cellular Component | nuclear pore |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 33.090 |
| SRR2545915 | Juvenile tuber | 31.640 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 33.530 |
| SRR5643514 | five period of Gastrodia elata | 43.900 | |
| SRR5643515 | five period of Gastrodia elata | 34.160 | |
| SRR5643524 | five period of Gastrodia elata | 41.870 | |
| SRR5643525 | five period of Gastrodia elata | 31.470 | |
| SRR5643528 | five period of Gastrodia elata | 32.260 | |
| SRR5643658 | five period of Gastrodia elata | 34.470 | |
| SRR5643659 | five period of Gastrodia elata | 26.430 | |
| SRR5643660 | five period of Gastrodia elata | 26.550 | |
| SRR5643661 | five period of Gastrodia elata | 27.000 | |
| SRR5643662 | five period of Gastrodia elata | 20.750 | |
| SRR5643663 | five period of Gastrodia elata | 23.950 | |
| SRR5643664 | five period of Gastrodia elata | 22.290 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 24.340 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 38.310 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 29.380 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 23.640 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 19.820 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 21.090 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 25.120 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 23.460 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 34.090 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 30.140 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 34.000 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 34.000 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 29.18 |
| Juven | Juvenile tuber | 34.72 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 27.47 | |
| Mother_Juven | Mother tuber of Juvenile | 35.51 |