Gene detail

Detail information of GWHGAAEX014251/evm.TU.scaffold_58.59

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|428305262\|ref\|YP_007142087.1\|	6.00E-55	ATP-dependent Clp protease proteolytic subunit [Crinalium epipsammum PCC 9333]
KOG	KOG0840	0	ATP-dependent Clp protease, proteolytic subunit
nr	gi\|590687306\|ref\|XP_007042627.1\|	0	ATP-dependent Clp protease proteolytic subunit [Theobroma cacao]
Swissprot	tr\|Q9XJ35\|CLPR1_ARATH	0	ATP-dependent Clp protease proteolytic subunit-related protein 1, chloroplastic (Precursor)
trEMBL	tr\|A0A061E852\|A0A061E852_THECC	0	ATP-dependent Clp protease proteolytic subunit {ECO:0000256\|RuleBase:RU003567}
TAIR	AT1G49970	0	CLP protease proteolytic subunit 1

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000054	4050545	4071492	+

Transcript Sequence
>GWHTAAEX014251 GCGTCTCTCCCAAACAAACCAGCTACTGTATAGGTTTGAGTCATGTGGACATCAGTCACAGCCGTTCGCTTTGTTCGTCTCTGATTCGTGAGCTCGGTGCCATGGCAATCTCCGCCGTTTCTGCTGCTGCTTCCACTCTCTCTAATGTTGTCGACAACGCGTCTCCTGGGAGGATGATTCTCGGGTCATCTCACTGCCTATCCCTCTTTAAGAGTTCGTCTCTTCTTTGCCCGAAGCTTTTGCTATCGTCTTCAGCTTTTACTCGGGTTAATTTCAAAAGAAATTTAGTTTCGAAATGCGAGACGTCCAGAAGCTACGAACACATACCTAAGCAGTTCCAGGAAGACAATCTCAAAGATGGATTGATGGAAAACTTTAAGAATGTTCCACAATACCTTTATGGTCTGACCACTTCACAAATGGACATGTTCATGACTGAAGATAGCCCAGTAAGACGCCAACAAGAAAGGGTTACAGAGGAAAGCATCTCATCAGCTAGCAATTACCTTGATAACGGAGGGATGTATAGCCTATCAGGAGTACCTGAAGGTCCATCAAAGTATAGTATGCGTGTTAACATGTACCGTGGAGGAGCAAGAGGTTATGGCAGGCCTAAAACTGCCCCTCCAGACTTGCCCTCTTTATTGCTAGATGCTCGAATTTGCTACCTGGGAATGCCTATTGTTCCAGCAGTGGCTGAGCTGGTTGTGGCACAGTTTATGTGGTTAGACTATGACAACCCCTCCAAACCTATTTACTTGTACATAAACTCATCTGGAACTCAGAATGAAAAGTTGGAGAATGTTGGGTCTGAAACTGAAGCATATGCAATAGCTGATACCATGACTTTCTGCAAATCCAAAGTATATACGATCAACTGTGGCATGGCTTACGGCCAAGCAGCAATGCTCCTGTCTTTAGGCTGCAAGGGTTTTAGAGCTCTGCAGCCCAATTCCTCCACTAAGTTATATCTGCCAAAGGTTAATAAATCAAGTGGTGCCGTCATCGACATGTGGATTAAGGCAAAAGAGCTGGATGCGAACACAGACTACTACATCGAGCTATTGGCCAAAGGAACCGGAAAAACTAAGGAAGAGATTTCCAAAGACATCCAGCGCCCAAAATATTTCCAAGCACAGGAAGCCGTTGATTATGGAATTGCAGATAAGATTATAGATTCGAGAGATTCCGCATTCGAGAAACGGGATTATGACGGACTCTTGGCCCAATCGAAAGCCATGCGGAGAACAGCTGGGGGCAATCCACAAGCTGCTCCTTCGGGACTTGGATAAATATGTTTTGAAGGTGTGTTCCTGAGTACATACATATATAGTTTCTGGCGCATGGTTTTTTTATGAAGCCCAGAGATGAATTATCATAGTATATGAAGAAATGTAGTGTGAGAGAGCTCGGTTGTAATATATTTTGAGATGAATTTGGCTCTTTTGGAAGCTTGAGTTCTAGTTTCATGGGTTTTATCCCTCTGGCGGGGTTCTGGCCTTTATAGTTGATGGCCCGAGATGATTGTTCTTTTTGGAGCGCATCTTACCCTACTTTTGCGTTAATTCTTCTCAAGTTCTGCTTCCATACCTCTAAGGTATAATTCTATAAATAGTGTTGCAAGAATGTTTATATAGGAGTTGTTTGAAACATCTTGTCCTTGTCTAAAAAAATACTTTTGCTATTATTATTGAGCCTAAAATTGTTTGTTGTCAATTCTCTTTTCTTTGCAAGCTCGTTATGTTTATAAACTTGTTGCTAAAATAATATTTAGAGTAATGCTTCATAT

Network for GWHGAAEX014251

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module8

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00574.22	CLP_protease	179	360	6.50E-38

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01358	clpP, CLPP	Cell cycle - Caulobacter	map04112
K01358	clpP, CLPP	Longevity regulating pathway - worm	map04212

Gene Ontology

GO term	Ontology	Name
GO:0006508	Biological Process	proteolysis
GO:0004252	Molecular Function	serine-type endopeptidase activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	138.070
SRP064423	SRR2545915	Juvenile tuber	251.950
SRP108465	SRR5643513	five period of Gastrodia elata	45.900
	SRR5643514	five period of Gastrodia elata	40.770
	SRR5643515	five period of Gastrodia elata	46.710
	SRR5643524	five period of Gastrodia elata	36.730
	SRR5643525	five period of Gastrodia elata	47.120
	SRR5643528	five period of Gastrodia elata	36.790
	SRR5643658	five period of Gastrodia elata	49.490
	SRR5643659	five period of Gastrodia elata	90.390
	SRR5643660	five period of Gastrodia elata	104.080
	SRR5643661	five period of Gastrodia elata	98.870
	SRR5643662	five period of Gastrodia elata	129.030
	SRR5643663	five period of Gastrodia elata	115.520
	SRR5643664	five period of Gastrodia elata	149.390
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	78.250
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	72.470
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	67.680
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	77.680
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	66.180
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	72.420
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	59.640
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	67.820
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	54.390
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	58.660
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	51.880
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	51.880
SRP279888	Gastro	Gastrodia elata tuber	122.08
	Juven	Juvenile tuber	55.22
	Mother_Gastro	Mother tuber of Gastrodia elata	27.12
	Mother_Juven	Mother tuber of Juvenile	35.04