Detail information of GWHGAAEX014258/evm.TU.scaffold_58.73


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|255034017|ref|YP_003084638.1|3.00E-101DEAD/DEAH box helicase [Dyadobacter fermentans DSM 18053]
KOGKOG03280Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily
nrgi|743834173|ref|XP_010935461.1|0PREDICTED: eukaryotic initiation factor 4A-3 [Elaeis guineensis]
Swissprottr|Q5VNM3|RH2_ORYSJ0DEAD-box ATP-dependent RNA helicase 2
trEMBLtr|B7EMG9|B7EMG9_ORYSJ0cDNA clone:J033052B21, full insert sequence {ECO:0000313|EMBL:BAG93566.1}
TAIRAT3G197600eukaryotic initiation factor 4A-III

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000005449047404935746-
Transcript Sequence

Network for GWHGAAEX014258

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module6

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00270.28DEAD592211.50E-40
PF00271.30Helicase_C2603681.30E-30
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K13025EIF4A3, FAL1 Spliceosome map03040
RNA transportmap03013
mRNA surveillance pathwaymap03015

Gene Ontology

GO term OntologyName
GO:0003676Molecular Functionnucleic acid binding
GO:0005524Molecular FunctionATP binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms774.740
SRR2545915Juvenile tuber332.950
SRP108465SRR5643513five period of Gastrodia elata136.010
SRR5643514five period of Gastrodia elata113.190
SRR5643515five period of Gastrodia elata128.880
SRR5643524five period of Gastrodia elata109.110
SRR5643525five period of Gastrodia elata215.560
SRR5643528five period of Gastrodia elata231.290
SRR5643658five period of Gastrodia elata224.460
SRR5643659five period of Gastrodia elata210.030
SRR5643660five period of Gastrodia elata260.830
SRR5643661five period of Gastrodia elata214.720
SRR5643662five period of Gastrodia elata235.320
SRR5643663five period of Gastrodia elata220.900
SRR5643664five period of Gastrodia elata260.250
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_1300.710
SRR6049655Rhizomagastrodiae_C368-T10_good_1276.500
SRR6049656Rhizomagastrodiae_C368-T07_good_1242.540
SRR6049657Rhizomagastrodiae_C368-T07_good_1492.660
SRR6049658Rhizomagastrodiae_C368-T04_good_1619.730
SRR6049659Rhizomagastrodiae_C368-T04_good_1876.810
SRR6049660Rhizomagastrodiae_C368-T01_good_1485.560
SRR6049661Rhizomagastrodiae_C368-T04_good_1593.270
SRR6049662Rhizomagastrodiae_C368-T01_good_1212.350
SRR6049663Rhizomagastrodiae_C368-T01_good_1347.730
SRR6049664Rhizomagastrodiae_C368-T10_good_1194.280
SRR6049665Rhizomagastrodiae_C368-T10_good_1194.280
SRP279888GastroGastrodia elata tuber 242.58
JuvenJuvenile tuber178.67
Mother_GastroMother tuber of Gastrodia elata 165.68
Mother_JuvenMother tuber of Juvenile 161.74