Detail information of GWHGAAEX014260/evm.TU.scaffold_58.77
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|392377852|ref|YP_004985011.1| | 4.00E-12 | glycosyl transferase group 1 (modular protein), partial [Azospirillum brasilense Sp245] |
| nr | gi|743814022|ref|XP_010929902.1| | 0 | PREDICTED: beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase-like isoform X2 [Elaeis guineensis] |
| trEMBL | tr|M0TYB2|M0TYB2_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr9P07530_001} |
| TAIR | AT3G27540 | 0 | beta-1,4-N-acetylglucosaminyltransferase family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000054 | 5279554 | 5281134 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX014260
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF04724.12 | Glyco_transf_17 | 41 | 385 | 8.40E-174 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K00737 | MGAT3 | Metabolic pathways | map01100 |
| N-Glycan biosynthesis | map00510 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006487 | Biological Process | protein N-linked glycosylation |
| GO:0003830 | Molecular Function | beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity |
| GO:0016020 | Cellular Component | membrane |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 5.390 |
| SRR2545915 | Juvenile tuber | 4.790 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 11.300 |
| SRR5643514 | five period of Gastrodia elata | 8.790 | |
| SRR5643515 | five period of Gastrodia elata | 11.500 | |
| SRR5643524 | five period of Gastrodia elata | 10.210 | |
| SRR5643525 | five period of Gastrodia elata | 10.420 | |
| SRR5643528 | five period of Gastrodia elata | 7.060 | |
| SRR5643658 | five period of Gastrodia elata | 8.940 | |
| SRR5643659 | five period of Gastrodia elata | 10.140 | |
| SRR5643660 | five period of Gastrodia elata | 6.820 | |
| SRR5643661 | five period of Gastrodia elata | 7.480 | |
| SRR5643662 | five period of Gastrodia elata | 8.950 | |
| SRR5643663 | five period of Gastrodia elata | 9.120 | |
| SRR5643664 | five period of Gastrodia elata | 9.280 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 17.880 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 22.510 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 17.460 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 15.840 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 15.250 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 15.750 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 17.820 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 16.760 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 19.690 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 18.250 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 31.140 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 31.140 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 9.91 |
| Juven | Juvenile tuber | 11.73 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 48.36 | |
| Mother_Juven | Mother tuber of Juvenile | 36.32 |