Detail information of GWHGAAEX014263/evm.TU.scaffold_59.2
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 5.00E-146 | FOG: PPR repeat |
| nr | gi|695080239|ref|XP_009387570.1| | 0 | PREDICTED: putative pentatricopeptide repeat-containing protein At5g52630 [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|Q9SHZ8|PP168_ARATH | 1.00E-146 | Pentatricopeptide repeat-containing protein At2g22070 |
| trEMBL | tr|V7D0V7|V7D0V7_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW35278.1} |
| trEMBL | tr|V7D0V7|V7D0V7_PHAVU | 3.00E-12 | Uncharacterized protein {ECO:0000313|EMBL:ESW35278.1} |
| TAIR | AT2G22070 | 5.00E-146 | pentatricopeptide (PPR) repeat-containing protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000068 | 8155 | 10289 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX014263
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module1 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01535.19 | PPR | 130 | 157 | 0.0021 |
| PF01535.19 | PPR | 208 | 231 | 0.00014 |
| PF13041.5 | PPR_2 | 234 | 282 | 2.30E-10 |
| PF13041.5 | PPR_2 | 337 | 385 | 7.10E-10 |
| PF01535.19 | PPR | 409 | 433 | 0.021 |
| PF01535.19 | PPR | 477 | 503 | 0.96 |
| PF14432.5 | DYW_deaminase | 508 | 631 | 2.50E-30 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
| GO:0008270 | Molecular Function | zinc ion binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 1.710 |
| SRR2545915 | Juvenile tuber | 1.160 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 2.450 |
| SRR5643514 | five period of Gastrodia elata | 1.910 | |
| SRR5643515 | five period of Gastrodia elata | 1.840 | |
| SRR5643524 | five period of Gastrodia elata | 1.280 | |
| SRR5643525 | five period of Gastrodia elata | 0.630 | |
| SRR5643528 | five period of Gastrodia elata | 0.740 | |
| SRR5643658 | five period of Gastrodia elata | 0.390 | |
| SRR5643659 | five period of Gastrodia elata | 2.970 | |
| SRR5643660 | five period of Gastrodia elata | 2.800 | |
| SRR5643661 | five period of Gastrodia elata | 3.690 | |
| SRR5643662 | five period of Gastrodia elata | 3.420 | |
| SRR5643663 | five period of Gastrodia elata | 2.620 | |
| SRR5643664 | five period of Gastrodia elata | 1.970 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 2.170 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 2.250 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 2.790 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 1.970 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 1.850 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 1.290 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 1.920 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 1.360 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 3.790 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 2.870 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 2.290 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 2.290 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 4.68 |
| Juven | Juvenile tuber | 2.04 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 2.04 | |
| Mother_Juven | Mother tuber of Juvenile | 0.90 |