Detail information of GWHGAAEX014267/evm.TU.scaffold_59.7
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|530780231|ref|YP_008432036.1| | 8.00E-92 | H/ACA RNA-protein complex protein Cbf5p [Thermofilum sp. 1910b] |
| KOG | KOG2529 | 0 | Pseudouridine synthase |
| nr | gi|672184093|ref|XP_008812346.1| | 0 | PREDICTED: LOW QUALITY PROTEIN: H/ACA ribonucleoprotein complex subunit 4-like [Phoenix dactylifera] |
| Swissprot | tr|Q9LD90|CBF5_ARATH | 0 | H/ACA ribonucleoprotein complex subunit 4 |
| trEMBL | tr|M0RSL7|M0RSL7_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr11P15870_001} |
| TAIR | AT3G57150 | 0 | homologue of NAP57 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000068 | 114366 | 117563 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX014267
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF08068.11 | DKCLD | 67 | 124 | 2.10E-30 |
| PF01509.17 | TruB_N | 128 | 244 | 1.20E-19 |
| PF16198.4 | TruB_C_2 | 245 | 311 | 3.60E-22 |
| PF01472.19 | PUA | 315 | 387 | 5.60E-21 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K11131 | DKC1, NOLA4, CBF5 | Ribosome biogenesis in eukaryotes | map03008 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006396 | Biological Process | RNA processing |
| GO:0009451 | Biological Process | RNA modification |
| GO:0001522 | Biological Process | pseudouridine synthesis |
| GO:0009982 | Molecular Function | pseudouridine synthase activity |
| GO:0003723 | Molecular Function | RNA binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 28.580 |
| SRR2545915 | Juvenile tuber | 23.380 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 39.080 |
| SRR5643514 | five period of Gastrodia elata | 39.080 | |
| SRR5643515 | five period of Gastrodia elata | 30.180 | |
| SRR5643524 | five period of Gastrodia elata | 37.730 | |
| SRR5643525 | five period of Gastrodia elata | 22.570 | |
| SRR5643528 | five period of Gastrodia elata | 18.020 | |
| SRR5643658 | five period of Gastrodia elata | 15.450 | |
| SRR5643659 | five period of Gastrodia elata | 53.190 | |
| SRR5643660 | five period of Gastrodia elata | 61.760 | |
| SRR5643661 | five period of Gastrodia elata | 54.180 | |
| SRR5643662 | five period of Gastrodia elata | 49.860 | |
| SRR5643663 | five period of Gastrodia elata | 39.920 | |
| SRR5643664 | five period of Gastrodia elata | 40.710 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 27.940 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 31.530 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 39.860 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 26.270 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 28.550 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 21.170 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 34.930 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 28.240 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 49.270 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 45.700 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 40.140 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 40.140 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 35.03 |
| Juven | Juvenile tuber | 21.64 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 8.36 | |
| Mother_Juven | Mother tuber of Juvenile | 7.44 |